Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq23 104 2e-17
>seq23
Length=2828041
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || || || |||||||| |||| || || || ||||||| |||||||| ||
Sbjct 925919 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCA 925860
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| ||||||| ||||||||||| ||||| || || || || || || || || ||||
Sbjct 925859 GCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTT 925800
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| || | || || | | || ||||| | || | |||||| ||||| | |||
Sbjct 925799 ACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTC 925740
Query 64427 TTTACGAAAATTTGCAT 64443
|| || || || |||||
Sbjct 925739 TTGACAAAGATCTGCAT 925723
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| ||||||| | || || || || | || || || || ||||||||||| || |
Sbjct 925494 ACCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGA 925435
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| |||||| |||| || || ||||| ||||| | || || || ||||| || |||||
Sbjct 925434 CAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGG 925375
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || ||||| || ||| ||| || || | || || | || ||
Sbjct 925374 GATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAAC 925315
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCA 64421
|| | ||| | ||||||||||||||
Sbjct 925314 CTCAAGAGTGATGGTCTTGCCGGTCA 925289
Score = 82.4 bits (90), Expect = 8e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || ||||| || || |||||||| || | | |||||| | ||
Sbjct 925197 AGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCC 925138
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
||||||||||||||||| | || | ||||||||||| || ||||| || || || ||
Sbjct 925137 TCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 925078
Query 64352 TGTATTTT 64359
|| || ||
Sbjct 925077 TGGATCTT 925070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499644631369880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |