Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq21 262 4e-65
>seq21
Length=3333843
Score = 262 bits (290), Expect = 4e-65
Identities = 610/917 (67%), Gaps = 2/917 (0%)
Strand=Plus/Minus
Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774
|| ||| | | ||||| ||||| || || ||| || || |||||| || | |||
Sbjct 608373 AACTACCAGTTCTTTGGTTTCAAGACACTTGAGCGCTCATATCTCCTCCGCATAAACGGC 608314
Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834
| ||| ||||||| || || || |||| ||||| || || | || |||||||| |
Sbjct 608313 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGAT 608254
Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894
||||| ||| | | | | | | ||||| | ||| | || |||
Sbjct 608253 GACATCGAGAAAGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 608194
Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953
| ||||| ||||||||||||| || || || || ||||| || || ||||| ||
Sbjct 608193 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCGCAAATGTCGTCATGCTTCCTCATC 608134
Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013
||| | |||| ||| ||| ||| |||| ||||| |||||| ||||||| ||
Sbjct 608133 GAC-ATGAAGGAGGACAGTATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGAT 608075
Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073
||| || ||| || || || || ||| || ||| | | ||||| | || || ||
Sbjct 608074 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 608015
Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133
|||| | || || || || || || ||||| ||| | || |||||||| || | ||||||
Sbjct 608014 CATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAA 607955
Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193
| | || ||||| || ||||||||||| | | | ||| | ||||| |||| ||
Sbjct 607954 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCT 607895
Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253
||||| |||||||| ||||| | |||| | |||||||| |||||||||||||| ||
Sbjct 607894 AGAGCCATGGCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCAAGGA 607835
Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313
|| | || | || |||||||||||||| ||| | || ||||| || ||||| ||
Sbjct 607834 GGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCG 607775
Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373
||| | | ||| | ||||| || | || || || || || || || || ||||
Sbjct 607774 TGTCCAAGACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGA 607715
Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433
|| | || || |||| |||| | | |||||| |||| ||||| |
Sbjct 607714 TGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAAAAGCAGAACAAGGGTCG 607655
Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493
|| | | || ||||| ||| | ||| | || | |||| ||||| ||
Sbjct 607654 CGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGG 607595
Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553
|| |||| || | | ||||||| || |||| |||| ||||||| || |||||||
Sbjct 607594 TAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGG 607535
Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613
||| ||||| || |||||||| |||||||| ||||| || |||| || ||| |
Sbjct 607534 TACCATCCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGT 607475
Query 94614 TGCTGTGTGTAACCTGG 94630
||||| || ||| |||
Sbjct 607474 CGCTGTTTGCAACTTGG 607458
Score = 100 bits (110), Expect = 3e-16
Identities = 206/302 (68%), Gaps = 12/302 (4%)
Strand=Plus/Minus
Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136
|||||||| ||| ||||||| | || |||||||| || |||||||| | |||||
Sbjct 607023 CACGGTGTACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATT 606964
Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196
|| ||||||||||||| ||||| || | |||||||||| | || | | || || |||
Sbjct 606963 CTGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTC 606904
Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGT 95255
|| || || |||| || ||||| | || ||||| || || | ||||| |
Sbjct 606903 GCTGGTGAGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGAC-ATGGGTCT 606845
Query 95256 GTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGG-----CTCCGTCCAGAAC 95310
|||| ||| || | ||||||| | | |||| | || || ||||
Sbjct 606844 GTGGTCTGAGAACATGAAGAACCGTATCAT---CGCCGATGGAGGTTCTATTGCCAG--G 606790
Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370
|| || | || || ||||| | ||| | || ||||||||||| ||||||||| |||||
Sbjct 606789 ATTCCCAACATCCCTGAGGAGACAAAGACTCTTTACAAGACCGTCTGGGAGATCTCGCAG 606730
Query 95371 CG 95372
||
Sbjct 606729 CG 606728
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494723033030920
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