Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq21 262 4e-65 >seq21 Length=3333843 Score = 262 bits (290), Expect = 4e-65 Identities = 610/917 (67%), Gaps = 2/917 (0%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||||| ||||| || || ||| || || |||||| || | ||| Sbjct 608373 AACTACCAGTTCTTTGGTTTCAAGACACTTGAGCGCTCATATCTCCTCCGCATAAACGGC 608314 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | ||| ||||||| || || || |||| ||||| || || | || |||||||| | Sbjct 608313 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGAT 608254 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| ||| | | | | | | ||||| | ||| | || ||| Sbjct 608253 GACATCGAGAAAGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 608194 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | ||||| ||||||||||||| || || || || ||||| || || ||||| || Sbjct 608193 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCGCAAATGTCGTCATGCTTCCTCATC 608134 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| ||| |||| ||||| |||||| ||||||| || Sbjct 608133 GAC-ATGAAGGAGGACAGTATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGAT 608075 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| || ||| || || || || ||| || ||| | | ||||| | || || || Sbjct 608074 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 608015 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| | || || || || || || ||||| ||| | || |||||||| || | |||||| Sbjct 608014 CATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAA 607955 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || ||||| || ||||||||||| | | | ||| | ||||| |||| || Sbjct 607954 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCT 607895 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||| |||||||| ||||| | |||| | |||||||| |||||||||||||| || Sbjct 607894 AGAGCCATGGCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCAAGGA 607835 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 || | || | || |||||||||||||| ||| | || ||||| || ||||| || Sbjct 607834 GGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCG 607775 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 ||| | | ||| | ||||| || | || || || || || || || || |||| Sbjct 607774 TGTCCAAGACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGA 607715 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || | || || |||| |||| | | |||||| |||| ||||| | Sbjct 607714 TGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAAAAGCAGAACAAGGGTCG 607655 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 || | | || ||||| ||| | ||| | || | |||| ||||| || Sbjct 607654 CGAGACTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGG 607595 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 || |||| || | | ||||||| || |||| |||| ||||||| || ||||||| Sbjct 607594 TAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGG 607535 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||| ||||| || |||||||| |||||||| ||||| || |||| || ||| | Sbjct 607534 TACCATCCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGT 607475 Query 94614 TGCTGTGTGTAACCTGG 94630 ||||| || ||| ||| Sbjct 607474 CGCTGTTTGCAACTTGG 607458 Score = 100 bits (110), Expect = 3e-16 Identities = 206/302 (68%), Gaps = 12/302 (4%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||||| ||| ||||||| | || |||||||| || |||||||| | ||||| Sbjct 607023 CACGGTGTACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATT 606964 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || ||||||||||||| ||||| || | |||||||||| | || | | || || ||| Sbjct 606963 CTGGGCAACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTC 606904 Query 95197 GCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACC-TGACGTCTCTGGGTGT 95255 || || || |||| || ||||| | || ||||| || || | ||||| | Sbjct 606903 GCTGGTGAGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGAC-ATGGGTCT 606845 Query 95256 GTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGG-----CTCCGTCCAGAAC 95310 |||| ||| || | ||||||| | | |||| | || || |||| Sbjct 606844 GTGGTCTGAGAACATGAAGAACCGTATCAT---CGCCGATGGAGGTTCTATTGCCAG--G 606790 Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370 || || | || || ||||| | ||| | || ||||||||||| ||||||||| ||||| Sbjct 606789 ATTCCCAACATCCCTGAGGAGACAAAGACTCTTTACAAGACCGTCTGGGAGATCTCGCAG 606730 Query 95371 CG 95372 || Sbjct 606729 CG 606728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723033030920