Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq21 199 4e-46
seq23 116 4e-21
seq26 89.7 5e-13
>seq21
Length=3333843
Score = 199 bits (220), Expect = 4e-46
Identities = 936/1471 (64%), Gaps = 43/1471 (3%)
Strand=Plus/Plus
Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068
||||| | || ||| | ||||||| || || ||||| || || | || || | ||
Sbjct 606860 AGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAA 606919
Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128
|| | ||| ||| | || || ||| | ||||| ||||| || || || | ||||
Sbjct 606920 TAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAG 606979
Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCC 153188
|| || |||||| || | | || || || || | |||||| | ||| | |||
Sbjct 606980 GCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCC 607039
Query 153189 TTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTA-- 153246
|||| | | ||| ||||| || | | ||||| | |||||||| |||||||| |
Sbjct 607040 TTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGG 607099
Query 153247 ACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCC--GTCGCGTTGGGC 153304
| || ||| | | ||||| || | | || |||| ||| || | ||| |
Sbjct 607100 ATAC-CCTGGGATA-CGGGAGATCCTTCGTAGGTCTTGTAAGGGCCAAGTTCCTTTGCG- 607156
Query 153305 CAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAG 153364
| ||||| | ||| || ||| ||| ||||| ||| |||||| | |||||
Sbjct 607157 -ATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAG 607215
Query 153365 AACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACC 153424
||||| || |||| | || | ||| || | ||||| ||||| |||||
Sbjct 607216 CTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACC 607275
Query 153425 CTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTATGG 153483
|| | ||| | ||||||||||| || ||||||||| | || ||| | | |
Sbjct 607276 TTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAG 607334
Query 153484 GATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCT 153543
| ||||| ||| ||||| || ||||| | |||||| || || | || | | |
Sbjct 607335 GGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGT 607394
Query 153544 TAAGTTTCTCGAAATCATA------GGTCATTTCGTCGACGCGTACGCATCGATTCACGG 153597
|| |||| ||| ||| | || | | | |||||| | | || ||
Sbjct 607395 GGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAA------AAGAAGGCAGGG 607448
Query 153598 CAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGG 153657
||| ||| |||| || || || || ||| || | || |||||| ||| ||||| |
Sbjct 607449 CAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAG 607508
Query 153658 CGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACG 153717
||| |||||| || ||| || | || | ||| ||||| ||||| ||||| |
Sbjct 607509 TGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAG 607568
Query 153718 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAA---ACC 153774
|||| ||| ||||||| | || || |||||| || | || | ||| |||
Sbjct 607569 CGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACC 607628
Query 153775 TATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGT 153834
| || | || || || || || ||| | || | ||||| | |||||
Sbjct 607629 AAAGC---TTTTGTGCGCGAACAGTCTCGCGACCCTTGTTCTGCTTTTCGTAGCTCTCGT 607685
Query 153835 ACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACA 153894
|||| || || || || |||||| ||||||||||| || |||| | ||| ||||
Sbjct 607686 ACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACA 607745
Query 153895 TCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCG 153954
|||| | ||| | ||| | | | ||| || |||||| || || || | ||| || |
Sbjct 607746 TCAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAG 607805
Query 153955 CGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTT---GCGTTTCAGATTGA 154011
|||| | ||| ||||| || | |||||| ||| ||| ||| ||| | |
Sbjct 607806 CGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAA 607862
Query 154012 GCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCT 154071
| | | | ||| ||| |||||||| || || | ||||| ||| | ||||||| |||||
Sbjct 607863 GGAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCT 607922
Query 154072 TT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCA 154128
| || ||||| ||||| | ||| | | |||||| | || || | |||||| |
Sbjct 607923 TGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGA 607982
Query 154129 GGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCA 154188
| ||| | | || ||||| || | ||| | ||| || || | | ||||
Sbjct 607983 GACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCA 608042
Query 154189 CGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCC--AGCGTCCT 154246
|||| | |||||| ||||| || ||| || || || |||| | | || ||
Sbjct 608043 CGTTGAGGCCAATACCGCCAGCGGTCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTC 608100
Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306
||| ||||||||||| || || || | | ||| | ||| || || ||||||||||
Sbjct 608101 GTAAATGCCGTCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGG 608160
Query 154307 A-ATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365
||| | || ||||| || | || || ||||| || || ||||| ||
Sbjct 608161 TGATG-GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACA 608219
Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425
| | ||| || |||||||| | ||||| ||||| ||||||||||| | || || |
Sbjct 608220 TGTAGTCGTAGGTCTCGATGGCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACAC 608279
Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456
||||||||||||| || || || ||||||||
Sbjct 608280 GCATGAGCATGTGTTGTGGGCGCTCGGCGAC 608310
Score = 145 bits (160), Expect = 8e-30
Identities = 504/764 (66%), Gaps = 27/764 (4%)
Strand=Plus/Minus
Query 52086 AACGATGACGAGCGCTATTTTATCAAGCACGTGTTGGCGTTCTTCGCCGCCGCCGATAGC 52145
|||||||||||||||| || ||| ||||| | || |||||||| ||| ||||| ||
Sbjct 2204095 AACGATGACGAGCGCTTCTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGATGGC 2204036
Query 52146 ATCGTGAACATTAACCTCATCGAGTACATGC---AGCGGAACGTTCCGGAACTCGAGGCG 52202
|| || ||| ||||| | ||| || | |||| | || | | ||||||
Sbjct 2204035 ATTGTCAACGAGAACCTTGTTGAGCG-ATTCTCTAGCGAA--GTACAAATCCCCGAGGCA 2203979
Query 52203 CAATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTACAATCTG 52262
| || ||| || ||| ||| | | || ||| ||| ||| | |||| ||| ||||
Sbjct 2203978 CGATGCTTCTACGGTTTCCAAATCATGATGGAGAACGTTCACTCAGAGACCTACTCTCTG 2203919
Query 52263 CTCATTGAGCAGCTGATAAAAGATGAGCACGAGC-GCGACACG---CTGCTGAATGCGTT 52318
||||| || || | | | || |||| | ||| ||| || | || | || || |
Sbjct 2203918 CTCATCGA-CACAT-ACATTAGC-GAGCCCAAGCAGCG-CAGGTACCTCTTCAACGCCAT 2203863
Query 52319 CGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGA 52378
||| || | || ||| | ||||| ||||| | ||||| || |||||| | |
Sbjct 2203862 CGACAACATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTCCGACAA 2203803
Query 52379 CACCGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttC 52438
| | |||| | ||| | ||| | || || |||||| || ||||| | || ||
Sbjct 2203802 GAACTCCACATTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAG 2203743
Query 52439 CGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTT 52498
||| || ||| ||||||| | | || | | || | |||||||| || || ||
Sbjct 2203742 CGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATT 2203683
Query 52499 CAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTA 52558
| ||||||| | || || || ||||| || ||||||| ||||| || ||||| ||
Sbjct 2203682 CTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTT 2203623
Query 52559 CAAGACGCGCGT-GACCGAAAAATTGGATTCG-GACACGATCCTGAGC-ATGTTCAAGGA 52615
| | | | | || ||| || | | || | || |||| || ||| ||
Sbjct 2203622 CT---CTCTCCTCGA--GAACAAGCCCAGCCCAGAGTCTGTCA-GAGCTATCATCACTGA 2203569
Query 52616 GGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCAT 52675
|| || | || || ||||||| || | | ||| || || || ||||| |||||
Sbjct 2203568 AGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCAT 2203509
Query 52676 GAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 52734
|||||| | || ||||||| | ||||||||||| || || || |||||| || || |
Sbjct 2203508 GAACGCT-ACTCTCATGTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCC 2203450
Query 52735 TCGGGCA-GCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCG 52793
|||| | | ||| || || | |||| ||| || || || || ||| | ||||||||
Sbjct 2203449 TCGGCAACGTCAAGGT-CTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCT 2203391
Query 52794 CTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|| | || ||||||||||| ||||||||||| |||||||| ||
Sbjct 2203390 CTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 2203347
>seq23
Length=2828041
Score = 116 bits (128), Expect = 4e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| |||||||||||| | |||||| ||| || | || || ||||
Sbjct 925688 GACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCAACTGCTTTCCGGCG 925629
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||||||||||||||| ||||| || ||||| ||| || || |
Sbjct 925628 AAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTCGACTTGACG 925569
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | || |||||||||| ||| | || || |||||||| || ||
Sbjct 925568 TTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTG 925509
Query 138601 ACAAAAATCTGCAT 138614
|| || || |||||
Sbjct 925508 ACGAAGATTTGCAT 925495
Score = 89.7 bits (98), Expect = 5e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||||||| || || || |||||||||||| || ||||
Sbjct 925460 GACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCG 925401
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || || || || |||||||| || || || ||||| ||| ||| || |
Sbjct 925400 AAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGACG 925341
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592
| || | |||||||| ||||| ||||| | || | || || || ||||
Sbjct 925340 TTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 925289
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || || || | | |||||||| || |||||||||||
Sbjct 925949 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 925890
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||| || || || ||||| | | || |||||||| ||||| |||||
Sbjct 925889 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGG 925830
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
||||| || ||||| ||| || |||| |||| || | |||||| | ||||| ||
Sbjct 925829 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTG-TCGATCGTGTCGCTAGACTCGAC 925771
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || || ||||| || ||||| ||||||||
Sbjct 925770 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 925723
>seq26
Length=2547288
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || || || | | |||||||||| || |||||||||||| |
Sbjct 1485391 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 1485450
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||||||||| || |||| |||| || |||||||||||||| ||
Sbjct 1485451 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 1485510
Query 138508 ATACCTTCTTTGTC 138521
|| || || |||||
Sbjct 1485511 ATGCCCTCCTTGTC 1485524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262232511440
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