Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq21 120 3e-22
seq23 105 6e-18
seq26 82.4 7e-11
>seq21
Length=3333843
Score = 120 bits (132), Expect = 3e-22
Identities = 250/368 (68%), Gaps = 27/368 (7%)
Strand=Plus/Minus
Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282
|||||||| || || || ||||||||| ||||| | ||||| ||| |||||||| ||
Sbjct 2203699 ATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGAC 2203640
Query 47283 TTTGCCTG---TCTCTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCA----C 47335
|| ||||| ||||| || | || ||| | ||| | | ||||| |
Sbjct 2203639 TTCGCCTGCCTTCTCTTCTCTCTC-CTCGAG---AACAA------GCCCAGCCCAGAGTC 2203590
Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395
||||| | || | | |||||||||| |||||| |||||| || ||| || ||
Sbjct 2203589 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 2203530
Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGC 47455
|| || | | || |||||||| | ||| | | |||||||| || |||||
Sbjct 2203529 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 2203470
Query 47456 CGACCGCCTGCTCGT-----TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCA 47510
||||| ||||| | || || || || |||| | |||||| || || ||
Sbjct 2203469 TGACCGTCTGCTGTTGGCCCTCGGC-AACGT----CAAGGTCTACCACGCCACCAACCCC 2203415
Query 47511 TTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570
||||| || ||| | |||||||| || | || ||||||||||| |||||||||||||||
Sbjct 2203414 TTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTC 2203355
Query 47571 GGCGAATA 47578
||||| ||
Sbjct 2203354 GGCGACTA 2203347
Score = 82.4 bits (90), Expect = 7e-11
Identities = 197/290 (68%), Gaps = 6/290 (2%)
Strand=Plus/Plus
Query 147273 GTAGATGCCGTCGATGCTGTCTTCCTTGATG-CATTGCAGGAAACACGAACACATTTGGG 147331
||| ||||||||||| ||||| ||||| ||| | || ||||| || || ||||||| |
Sbjct 608101 GTAAATGCCGTCGATACTGTCCTCCTTCATGTCGATG-AGGAAGCATGACGACATTTGCG 608159
Query 147332 GACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCA-GACTC 147390
| |||||||| |||| ||| || |||||| ||||| || | || |
Sbjct 608160 GTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGAC 608218
Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450
|| | | || || || ||||| || | |||||| ||||||||| | | || ||
Sbjct 608219 ATGTAGTCGTAGGTCTCGATGGCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACA 608278
Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCA 147510
|||||||||||||| || || || || || | | | | || | | |||||| |
Sbjct 608279 CGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATAT-GA 608337
Query 147511 TTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559
| || || || |||||||||||| ||| ||||| | |||| | || ||
Sbjct 608338 GCGCTCAAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGT 608387
>seq23
Length=2828041
Score = 105 bits (116), Expect = 6e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||| || || | || | |||||| || | |||||||| || || || ||||| ||
Sbjct 925950 TCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 925891
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| ||| || || || ||||| || |||||| | || | |||||||| || |||||
Sbjct 925890 GAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGG 925831
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||| | | |||| ||||| || ||||||
Sbjct 925830 GATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGAC 925771
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || || ||||| ||||| || ||||| ||||||||
Sbjct 925770 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 925723
Score = 100 bits (110), Expect = 3e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
||||| || || || || ||||| ||| || |||||| ||| || ||||| || ||
Sbjct 925182 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCG 925123
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || || || ||||||||||||||| ||| || ||||
Sbjct 925122 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 925063
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| | |||| ||||| | | ||| || |||| ||| | || || |||||
Sbjct 925062 ACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 925010
Score = 89.7 bits (98), Expect = 5e-13
Identities = 127/176 (72%), Gaps = 2/176 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || ||||| ||||| ||| || ||||| || || || || |||||
Sbjct 925463 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 925404
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| |||| | || |||||||| ||||| |||||||||||||| ||| || ||||
Sbjct 925403 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 925344
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091
| |||| |||| |||||| | ||| || || | || | || ||||||||||
Sbjct 925343 ACGTTG-TCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 925289
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | |||||| || | || ||||| ||||| || ||||| |||
Sbjct 925721 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 925662
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || | ||| ||||| ||| |||| | ||||| || || |||||
Sbjct 925661 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 925602
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| ||||||||||| ||| ||| ||||| |||| || | ||||| | || ||
Sbjct 925601 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTG-TCAATAGTGTCGCTTGATTCCAC 925543
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| || | || ||||| ||||| || || || || || |||||
Sbjct 925542 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495
>seq26
Length=2547288
Score = 82.4 bits (90), Expect = 7e-11
Identities = 113/157 (72%), Gaps = 1/157 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | || ||||| || || || ||||| ||| |
Sbjct 1485391 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 1485450
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || ||||| ||| |||||| ||||| || || || ||
Sbjct 1485451 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 1485510
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGT 127042
||||||||||||||| ||| || ||||| |||||
Sbjct 1485511 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 1485547
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500639518480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |