Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq21 120 3e-22 seq23 105 6e-18 seq26 82.4 7e-11 >seq21 Length=3333843 Score = 120 bits (132), Expect = 3e-22 Identities = 250/368 (68%), Gaps = 27/368 (7%) Strand=Plus/Minus Query 47223 ATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAAC 47282 |||||||| || || || ||||||||| ||||| | ||||| ||| |||||||| || Sbjct 2203699 ATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGAC 2203640 Query 47283 TTTGCCTG---TCTCTACTACAACACTAGAGTCGATCAAAAGTTGGACGTGCCCA----C 47335 || ||||| ||||| || | || ||| | ||| | | ||||| | Sbjct 2203639 TTCGCCTGCCTTCTCTTCTCTCTC-CTCGAG---AACAA------GCCCAGCCCAGAGTC 2203590 Query 47336 CGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCT 47395 ||||| | || | | |||||||||| |||||| |||||| || ||| || || Sbjct 2203589 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 2203530 Query 47396 GCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGC 47455 || || | | || |||||||| | ||| | | |||||||| || ||||| Sbjct 2203529 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 2203470 Query 47456 CGACCGCCTGCTCGT-----TCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCA 47510 ||||| ||||| | || || || || |||| | |||||| || || || Sbjct 2203469 TGACCGTCTGCTGTTGGCCCTCGGC-AACGT----CAAGGTCTACCACGCCACCAACCCC 2203415 Query 47511 TTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 47570 ||||| || ||| | |||||||| || | || ||||||||||| ||||||||||||||| Sbjct 2203414 TTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGCGTC 2203355 Query 47571 GGCGAATA 47578 ||||| || Sbjct 2203354 GGCGACTA 2203347 Score = 82.4 bits (90), Expect = 7e-11 Identities = 197/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 147273 GTAGATGCCGTCGATGCTGTCTTCCTTGATG-CATTGCAGGAAACACGAACACATTTGGG 147331 ||| ||||||||||| ||||| ||||| ||| | || ||||| || || ||||||| | Sbjct 608101 GTAAATGCCGTCGATACTGTCCTCCTTCATGTCGATG-AGGAAGCATGACGACATTTGCG 608159 Query 147332 GACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCA-GACTC 147390 | |||||||| |||| ||| || |||||| ||||| || | || | Sbjct 608160 GTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGAC 608218 Query 147391 ATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACG 147450 || | | || || || ||||| || | |||||| ||||||||| | | || || Sbjct 608219 ATGTAGTCGTAGGTCTCGATGGCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACA 608278 Query 147451 CGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCA 147510 |||||||||||||| || || || || || | | | | || | | |||||| | Sbjct 608279 CGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATAT-GA 608337 Query 147511 TTGGTC-AGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559 | || || || |||||||||||| ||| ||||| | |||| | || || Sbjct 608338 GCGCTCAAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGT 608387 >seq23 Length=2828041 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | || | |||||| || | |||||||| || || || ||||| || Sbjct 925950 TCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 925891 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | ||| || || || ||||| || |||||| | || | |||||||| || ||||| Sbjct 925890 GAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGG 925831 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | | |||| ||||| || |||||| Sbjct 925830 GATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGAC 925771 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || ||||| ||||| || ||||| |||||||| Sbjct 925770 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 925723 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| || || || || ||||| ||| || |||||| ||| || ||||| || || Sbjct 925182 GTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCG 925123 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 925122 GCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTG 925063 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | |||| ||||| | | ||| || |||| ||| | || || ||||| Sbjct 925062 ACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGT 925010 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| ||| || ||||| || || || || ||||| Sbjct 925463 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 925404 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || |||||||| ||||| |||||||||||||| ||| || |||| Sbjct 925403 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 925344 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCA 127091 | |||| |||| |||||| | ||| || || | || | || |||||||||| Sbjct 925343 ACGTTG-TCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 925289 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | || ||||| ||||| || ||||| ||| Sbjct 925721 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 925662 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || | ||| ||||| ||| |||| | ||||| || || ||||| Sbjct 925661 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 925602 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| ||| ||| ||||| |||| || | ||||| | || || Sbjct 925601 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTG-TCAATAGTGTCGCTTGATTCCAC 925543 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| ||||| || || || || || ||||| Sbjct 925542 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495 >seq26 Length=2547288 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/157 (72%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || || || ||||| ||| | Sbjct 1485391 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 1485450 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || ||||| ||| |||||| ||||| || || || || Sbjct 1485451 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 1485510 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGT 127042 ||||||||||||||| ||| || ||||| ||||| Sbjct 1485511 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT 1485547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500639518480