Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq21 120 3e-22
>seq21
Length=3333843
Score = 120 bits (132), Expect = 3e-22
Identities = 878/1397 (63%), Gaps = 39/1397 (3%)
Strand=Plus/Minus
Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957
||||||||||| || ||||| ||||||||||| || ||| | ||| | |||||
Sbjct 608313 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGAT 608254
Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017
|||||||| || || | ||| || ||||| | ||||||||||| | ||||| |||||
Sbjct 608253 GACATCGAGAAAGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 608194
Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077
|| || |||||| ||| ||||| | || || |||| || || || | ||
Sbjct 608193 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCGCAAATGTCGTCATGCTTCCTCATC 608134
Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTGAT 123136
| || || ||||| ||| ||| || || || || | | || || ||||||||
Sbjct 608133 GACATGAAGGAGGACAGTATCGACGGCATTTACGACACACT-CAAGACCTGTGCGTTGAT 608075
Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196
||||| | ||||| || ||| | ||||||||| | | | | ||
Sbjct 608074 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 608015
Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256
|||| | |||| |||||| | ||| ||| ||||||| || || ||||| ||
Sbjct 608014 CATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAA 607955
Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCT 123313
| | | || | ||||||||||| || ||| || ||| || | || ||||| ||
Sbjct 607954 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCT 607895
Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTT-TTTAAATTTAAAACGCAACATGGGGGCGG 123372
||| || ||||||| ||| || | | ||| || | | | | ||| || ||
Sbjct 607894 AGAGCCATGGCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAG-AACCACGGCAAGG 607836
Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432
| || || |||||| | || |||||| | ||| | || || | || ||| |
Sbjct 607835 AGGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGC 607776
Query 123433 GCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGC 123491
| || ||||| ||||| ||| | || ||||| ||||| || ||| || ||| | |
Sbjct 607775 GTGTCCAAGACAACGGCAACTGGACACTGATGTG-CCCGAACGAGTGCCCTGGCCTCGCC 607717
Query 123492 GACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA-AAC- 123549
|| || ||||| | | || || | |||||| | ||||| || ||| |||
Sbjct 607716 GATGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGA-----AAAGCAGAACA 607662
Query 123550 AGGTTAGTCAG---GTTCCGGCAC--GTGATTTGTTCAAATTTATTATCGAAACACAAGT 123604
||| | | || |||| |||| | |||| | | || | || ||||
Sbjct 607661 AGGGTCGCGAGACTGTTCGCGCACAAAAGCTTTGGT--ACGCCATCCTTGAGGCACAGAC 607604
Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664
||| || || | || | ||||||||||| ||||| |||||| | || | ||| ||||
Sbjct 607603 CGAGACTGGTAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAA 607544
Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724
||| | || || || | || || ||| | || ||| | || |||| || | |
Sbjct 607543 GAACCTCGGTACCATCCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCC 607484
Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGA----AA 123780
||| | || || || || || |||||||| || | || | || ||||| ||
Sbjct 607483 TGATGAGGTCGCTGTTTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACAA 607424
Query 123781 --ACGGCGCTTTTAATTTCCAAACGCTCAAACGCA-TAACAAAAACTGTAGTAA---AGA 123834
||||| ||| | ||| | | |||| ||| | | ||| | || || | |
Sbjct 607423 GGCCGGCGTGTTTGACTTCAAGAAGCTC-CACGAAGTCACACA---GGTCGTCACCCGCA 607368
Query 123835 ATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATT 123894
| |||||||| || ||||| || || || ||| | || || || || || |
Sbjct 607367 ACTTGAACAAGATCATCGAGGTCAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACT 607308
Query 123895 TGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGC 123954
| ||| |||| |||| |||| ||||||| | ||||| || || | || |
Sbjct 607307 TCCGCCACCGACCCATCGGTATGGGTGTTCAAGGTCTTGCCGATGCCTTCCTCGCACTCC 607248
Query 123955 GCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTT 124014
|| | || | ||| |||||||| ||| ||| || | ||||| ||| || || |
Sbjct 607247 GCCTTCCTTTCGAGTCAGACGAAGCTAAGAAGCTCAACATCCAAATCTTCGAGACCATCT 607188
Query 124015 ATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTT 124074
| | | ||| | | ||||| | || || | ||| | ||| | | |
Sbjct 607187 ACCATGCTGCTCTCACTTCCTCATGCGACATCGCAAAGGAACTTGGCCCTTACAAGACCT 607128
Query 124075 ACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGA 124134
||| || || | || ||||| | |||||||| |||||||||| ||||| |
Sbjct 607127 ACGAAGGATCTCCCGTATCCCAGGGTATCCTCCAGTACGATATGTGGAATGTCACACCTA 607068
Query 124135 CAAATTTGTGGGACTGGAGCGT-TTTAAAACAACGCATATCGACGCACGGTTTGCGTAAC 124193
| | | ||||||||| |||| | | || | || | ||||||| | || |||
Sbjct 607067 CTGACCTCTGGGACTGG-GCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGCAAC 607009
Query 124194 TCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAA 124253
|||||| | | || |||||| || || ||||| | || ||| | || ||||||||
Sbjct 607008 TCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAG 606949
Query 124254 TCCTTCGAGCCGTTCAC 124270
| ||||||||| | |||
Sbjct 606948 TGCTTCGAGCCATACAC 606932
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452003047448920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |