Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq21 120 3e-22 >seq21 Length=3333843 Score = 120 bits (132), Expect = 3e-22 Identities = 878/1397 (63%), Gaps = 39/1397 (3%) Strand=Plus/Minus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||||||||| || ||||| ||||||||||| || ||| | ||| | ||||| Sbjct 608313 AAGGTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGAT 608254 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 |||||||| || || | ||| || ||||| | ||||||||||| | ||||| ||||| Sbjct 608253 GACATCGAGAAAGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCC 608194 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || || |||||| ||| ||||| | || || |||| || || || | || Sbjct 608193 TCGCCGACGTTGTTCAACGCGGGCACACCATCACCGCAAATGTCGTCATGCTTCCTCATC 608134 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGA-TTGCGCGTTGAT 123136 | || || ||||| ||| ||| || || || || | | || || |||||||| Sbjct 608133 GACATGAAGGAGGACAGTATCGACGGCATTTACGACACACT-CAAGACCTGTGCGTTGAT 608075 Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196 ||||| | ||||| || ||| | ||||||||| | | | | || Sbjct 608074 CTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATA 608015 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 |||| | |||| |||||| | ||| ||| ||||||| || || ||||| || Sbjct 608014 CATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAA 607955 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTATCT 123313 | | | || | ||||||||||| || ||| || ||| || | || ||||| || Sbjct 607954 CACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCT 607895 Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTT-TTTAAATTTAAAACGCAACATGGGGGCGG 123372 ||| || ||||||| ||| || | | ||| || | | | | ||| || || Sbjct 607894 AGAGCCATGGCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAG-AACCACGGCAAGG 607836 Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432 | || || |||||| | || |||||| | ||| | || || | || ||| | Sbjct 607835 AGGAGGTCCGCGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGC 607776 Query 123433 GCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGC 123491 | || ||||| ||||| ||| | || ||||| ||||| || ||| || ||| | | Sbjct 607775 GTGTCCAAGACAACGGCAACTGGACACTGATGTG-CCCGAACGAGTGCCCTGGCCTCGCC 607717 Query 123492 GACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCA-AAC- 123549 || || ||||| | | || || | |||||| | ||||| || ||| ||| Sbjct 607716 GATGTCTACGGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGA-----AAAGCAGAACA 607662 Query 123550 AGGTTAGTCAG---GTTCCGGCAC--GTGATTTGTTCAAATTTATTATCGAAACACAAGT 123604 ||| | | || |||| |||| | |||| | | || | || |||| Sbjct 607661 AGGGTCGCGAGACTGTTCGCGCACAAAAGCTTTGGT--ACGCCATCCTTGAGGCACAGAC 607604 Query 123605 CGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAG 123664 ||| || || | || | ||||||||||| ||||| |||||| | || | ||| |||| Sbjct 607603 CGAGACTGGTAACCCCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAA 607544 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724 ||| | || || || | || || ||| | || ||| | || |||| || | | Sbjct 607543 GAACCTCGGTACCATCCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCC 607484 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGA----AA 123780 ||| | || || || || || |||||||| || | || | || ||||| || Sbjct 607483 TGATGAGGTCGCTGTTTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACAA 607424 Query 123781 --ACGGCGCTTTTAATTTCCAAACGCTCAAACGCA-TAACAAAAACTGTAGTAA---AGA 123834 ||||| ||| | ||| | | |||| ||| | | ||| | || || | | Sbjct 607423 GGCCGGCGTGTTTGACTTCAAGAAGCTC-CACGAAGTCACACA---GGTCGTCACCCGCA 607368 Query 123835 ATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATT 123894 | |||||||| || ||||| || || || ||| | || || || || || | Sbjct 607367 ACTTGAACAAGATCATCGAGGTCAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACT 607308 Query 123895 TGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGC 123954 | ||| |||| |||| |||| ||||||| | ||||| || || | || | Sbjct 607307 TCCGCCACCGACCCATCGGTATGGGTGTTCAAGGTCTTGCCGATGCCTTCCTCGCACTCC 607248 Query 123955 GCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTT 124014 || | || | ||| |||||||| ||| ||| || | ||||| ||| || || | Sbjct 607247 GCCTTCCTTTCGAGTCAGACGAAGCTAAGAAGCTCAACATCCAAATCTTCGAGACCATCT 607188 Query 124015 ATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTT 124074 | | | ||| | | ||||| | || || | ||| | ||| | | | Sbjct 607187 ACCATGCTGCTCTCACTTCCTCATGCGACATCGCAAAGGAACTTGGCCCTTACAAGACCT 607128 Query 124075 ACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGA 124134 ||| || || | || ||||| | |||||||| |||||||||| ||||| | Sbjct 607127 ACGAAGGATCTCCCGTATCCCAGGGTATCCTCCAGTACGATATGTGGAATGTCACACCTA 607068 Query 124135 CAAATTTGTGGGACTGGAGCGT-TTTAAAACAACGCATATCGACGCACGGTTTGCGTAAC 124193 | | | ||||||||| |||| | | || | || | ||||||| | || ||| Sbjct 607067 CTGACCTCTGGGACTGG-GCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGCAAC 607009 Query 124194 TCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAA 124253 |||||| | | || |||||| || || ||||| | || ||| | || |||||||| Sbjct 607008 TCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAG 606949 Query 124254 TCCTTCGAGCCGTTCAC 124270 | ||||||||| | ||| Sbjct 606948 TGCTTCGAGCCATACAC 606932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003047448920