Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq21 210 3e-49 >seq21 Length=3333843 Score = 210 bits (232), Expect = 3e-49 Identities = 1104/1743 (63%), Gaps = 41/1743 (2%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 ||||| |||||||| || ||||| || || ||||||| || | ||||| || | Sbjct 606575 CGGAGATAGTACATGCCAGTCTTCAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTG 606634 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | || || | |||| || ||| | || || || || ||||| Sbjct 606635 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAA 606694 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCAT--CTTGATTTCCCACACAGTTC 115735 || || || || ||||| ||||| | |||||| | ||| ||||| || || Sbjct 606695 GCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTCT 606752 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGG--ATAGAGCCACCTGC 115793 |||| || |||| | || || ||||| | || || ||| ||||| |||| | Sbjct 606753 TGTAAAGAGTCTTTGTCTCCTCAGGGATGTTGG-GA-ATCCTGGCAATAGA---ACCTCC 606807 Query 115794 CTTGACCATGAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCT- 115849 | | | |||| | | |||||| | || ||||| ||||| || | || |||| Sbjct 606808 ATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTT 606867 Query 115850 ---CCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGA 115906 | || | | | |||||||| |||||||| |||||| || | ||||| Sbjct 606868 GAGCAACCATGGG----TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGA 606923 Query 115907 TGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTG 115966 |||||| ||||||||||| |||||||| ||||| |||| || || | |||||||| | Sbjct 606924 TGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAG 606983 Query 115967 TGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGA 116026 | ||||||||||| ||||| || |||||| | ||| | | ||| ||||| | Sbjct 606984 TTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCA 607043 Query 116027 GGGCGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGAT 116084 | | |||||| | || | || | || | | | ||||||||| |||||||||| Sbjct 607044 GAGACGCCCAGTCCCAGAGGTCAG-TAGGTGT-GACATTCCACATATCGTACTGGAGGAT 607101 Query 116085 ACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC 116144 ||| ||||| | || ||||| || | |||| || ||||| ||| || | || Sbjct 607102 ACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGGCCAAGTTCCTTTGCGATGTC 607161 Query 116145 GGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTT 116204 | | | ||| || || || || || ||||| || || | || | ||| Sbjct 607162 GCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTT 607221 Query 116205 GGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGGAC 116264 || ||||| || || || | || ||| | || |||| || |||||||| || Sbjct 607222 AGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAAC 607281 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAA 116324 ||| | || || || || || | | || || || || || || || Sbjct 607282 ACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTG 607341 Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 116384 || ||||| | | | || | || |||||| |||| ||||| ||| || ||||| Sbjct 607342 GTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTT 607401 Query 116385 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 116444 | | | ||||| || | || | | |||| | ||| ||||| | || |||| Sbjct 607402 CTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAA 607461 Query 116445 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGA 116504 || || |||| | |||||| | | |||||||| | ||| || || |||| || || Sbjct 607462 GTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGA 607521 Query 116505 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAG 116564 || ||||| || | |||||| || || ||| ||| || || ||||||||||| Sbjct 607522 GCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAG 607581 Query 116565 CATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGCGGC 116624 |||| | || | || ||||| || || | || || || || | ||| | | || Sbjct 607582 CATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGC 607641 Query 116625 TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTC 116684 | ||||| || | || || ||||| | ||| || || || || || Sbjct 607642 GCGAACAGTCTCGCGACCCTTGTTCTGCTTTTCGTAGCTCTCGTACAGAGCTTCGAATTC 607701 Query 116685 TTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACC 116744 |||||| | || | ||| || || || | || || | || | ||| | || Sbjct 607702 TTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCC 607761 Query 116745 ACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804 || | || ||||||||||||||||| || ||||| || || |||||||||| || Sbjct 607762 GTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCG 607821 Query 116805 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 116864 | ||| | || || | || || || |||| || | || | | || || || Sbjct 607822 AGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAAGACGTCAGC 607881 Query 116865 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------ACCAGCCTGGTT 116918 |||||| || || ||||| | |||| | | ||| |||| ||| |||||| Sbjct 607882 GTGCCATGGCTCTAGGTAGATGGCGA-AGGCACCT--GGACGCTTGTTGCCACCCTGGTC 607938 Query 116919 TACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCC 116978 ||||| | || || ||| |||| || ||||| ||||||| ||| | |||| || Sbjct 607939 GACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCC 607998 Query 116979 ATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATA 117036 || || || |||| || ||| | | || | | ||| | || | |||||| Sbjct 607999 GTTAGTGCCACCGATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATA 608056 Query 117037 CCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATC 117096 || || || ||| ||||| || || | |||| || |||| || || ||||| Sbjct 608057 CCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATA 608116 Query 117097 GAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCG 117156 ||| |||| | ||||||||||||| ||||||||| || |||||| || ||| Sbjct 608117 CTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCCCGCG 608176 Query 117157 TTGAAGAGGGTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTATCGTAGGTCTC 117215 ||||| | || || | ||||| |||| ||| ||| ||||| | ||||||||||| Sbjct 608177 TTGAACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTC 608235 Query 117216 CAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTG 117275 | | | ||||| || |||||||| || | | || ||||| | ||||| ||| Sbjct 608236 GATGGCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 608295 Query 117276 GGG 117278 || Sbjct 608296 TGG 608298 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 |||||||||||||||||||| || || ||||| ||||| ||||| ||||| |||||| Sbjct 2203653 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 2203712 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| || | || || || ||||||||| ||||| ||| ||||| Sbjct 2203713 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 2203772 Query 127658 GCAAATAGACGCTCGGCAAA 127677 |||| || || | ||| || Sbjct 2203773 GCAACGAGGCGGTTGGCGAA 2203792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506992941320