Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq21 120 5e-22
>seq21
Length=3333843
Score = 120 bits (132), Expect = 5e-22
Identities = 329/497 (66%), Gaps = 9/497 (2%)
Strand=Plus/Plus
Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896
||||| || || ||||| ||||||| | ||||| | || | | ||||||||||||
Sbjct 606530 TCTTGGTCGACAGTGAATTGAATGGGAGCCGAGGCAGCCATGGTACGGAGATAGTACATG 606589
Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
|| ||||| || || || ||| || | |||||| |||| | |||| || |
Sbjct 606590 CCAGTCTTCAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTGATCTTGCCCATAGTA 606649
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016
|| || |||||| ||||| || ||||| ||||| ||||||| | || || |||
Sbjct 606650 GGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCG 606709
Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG-AACACGTCTCTGGT 204075
||||| | || || | |||||| |||||||| || |||||| || |||| | ||
Sbjct 606710 GCCATCTCAATGATCCTTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGAGTCT-TTGT 606768
Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG---ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132
| | ||| || || | ||||| || || || ||||| || | | |
Sbjct 606769 CTCCTCAGG--GATGTTGGGA-ATCCTGGCAATAGAACCTCCATCGGCGATGATACGGTT 606825
Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192
| || | | ||| ||||| |||| || || ||| | || |||||||
Sbjct 606826 CTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTGAC 606885
Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252
| ||| || || || | || || | |||| | | |||| |||| |||| |||||
Sbjct 606886 AACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAA 606945
Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312
|||||||||||| | |||||| | ||| ||| || |||||||| || | ||||||
Sbjct 606946 GCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAG 607005
Query 204313 GGAGTTGCGCACACCGT 204329
|||||||| |||||||
Sbjct 607006 CGAGTTGCGTACACCGT 607022
Score = 87.8 bits (96), Expect = 3e-12
Identities = 213/323 (66%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 205072 GTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACA 205131
|||||| || | || || |||||| || || || || || || | || || ||
Sbjct 607684 GTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCA 607743
Query 205132 CATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAG 205191
|||||| | ||| | | ||||| || | || ||| || ||||| ||||||||
Sbjct 607744 CATCAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAG 607803
Query 205192 GCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAG 205251
|||| || ||||| || || | | | || | || ||||||| || ||| ||
Sbjct 607804 AGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAG 607863
Query 205252 CCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTT 205311
|| | | ||| |||||||| ||||||| | | ||| | || ||||| | |||
Sbjct 607864 GAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTT 607923
Query 205312 GTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAG 205371
||| ||||||||||| || ||||| | |||| | || || ||||| || | ||
Sbjct 607924 GTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAG 607983
Query 205372 ACCGTTGGCGGTCCCGTTCGTGC 205394
|||||| | || ||||| ||||
Sbjct 607984 ACCGTTAGATGTTCCGTTAGTGC 608006
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795154931635120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |