Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq21 120 5e-22 >seq21 Length=3333843 Score = 120 bits (132), Expect = 5e-22 Identities = 329/497 (66%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 203838 TCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATG 203896 ||||| || || ||||| ||||||| | ||||| | || | | |||||||||||| Sbjct 606530 TCTTGGTCGACAGTGAATTGAATGGGAGCCGAGGCAGCCATGGTACGGAGATAGTACATG 606589 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || || || ||| || | |||||| |||| | |||| || | Sbjct 606590 CCAGTCTTCAGACCAGCCTTCCAGCCAGCAAAGTGCATAGAAGTGATCTTGCCCATAGTA 606649 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || || |||||| ||||| || ||||| ||||| ||||||| | || || ||| Sbjct 606650 GGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCG 606709 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTG-AACACGTCTCTGGT 204075 ||||| | || || | |||||| |||||||| || |||||| || |||| | || Sbjct 606710 GCCATCTCAATGATCCTTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGAGTCT-TTGT 606768 Query 204076 GTGTTGAGGCACATCTTCCCACGTCCTG---ATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 | | ||| || || | ||||| || || || ||||| || | | | Sbjct 606769 CTCCTCAGG--GATGTTGGGA-ATCCTGGCAATAGAACCTCCATCGGCGATGATACGGTT 606825 Query 204133 CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGAT 204192 | || | | ||| ||||| |||| || || ||| | || ||||||| Sbjct 606826 CTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTGAC 606885 Query 204193 GATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAA 204252 | ||| || || || | || || | |||| | | |||| |||| |||| ||||| Sbjct 606886 AACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAA 606945 Query 204253 CGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAG 204312 |||||||||||| | |||||| | ||| ||| || |||||||| || | |||||| Sbjct 606946 GCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAG 607005 Query 204313 GGAGTTGCGCACACCGT 204329 |||||||| ||||||| Sbjct 607006 CGAGTTGCGTACACCGT 607022 Score = 87.8 bits (96), Expect = 3e-12 Identities = 213/323 (66%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 205072 GTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTGGGACA 205131 |||||| || | || || |||||| || || || || || || | || || || Sbjct 607684 GTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCA 607743 Query 205132 CATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAG 205191 |||||| | ||| | | ||||| || | || ||| || ||||| |||||||| Sbjct 607744 CATCAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAG 607803 Query 205192 GCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAG 205251 |||| || ||||| || || | | | || | || ||||||| || ||| || Sbjct 607804 AGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAG 607863 Query 205252 CCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTT 205311 || | | ||| |||||||| ||||||| | | ||| | || ||||| | ||| Sbjct 607864 GAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTT 607923 Query 205312 GTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAG 205371 ||| ||||||||||| || ||||| | |||| | || || ||||| || | || Sbjct 607924 GTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAG 607983 Query 205372 ACCGTTGGCGGTCCCGTTCGTGC 205394 |||||| | || ||||| |||| Sbjct 607984 ACCGTTAGATGTTCCGTTAGTGC 608006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154931635120