Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq23 138 3e-27 seq12 113 1e-19 seq26 105 2e-17 >seq23 Length=2828041 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||||||||||| ||||||||| | | ||| | || ||| Sbjct 925706 AGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCT 925647 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||||||||||||||||||||| ||||||||| ||| || || || Sbjct 925646 TCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCT 925587 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| || | ||||| ||| ||| || || | |||||| ||| Sbjct 925586 TGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTC 925527 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 925526 TTGCCAGTCAGGGTCTTGACGAAGATTTG 925498 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||||||||| |||||||| |||| ||||||||| | | || Sbjct 925943 CGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTT 925884 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || |||||||||||||| || ||||| ||||||||||||||||| ||| || || Sbjct 925883 CGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCC 925824 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | || || ||||| Sbjct 925823 TCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAAT 925764 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| || ||||| || || Sbjct 925763 GTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTG 925726 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||||||||| || || |||||||| || | ||||||||| | || || | || || Sbjct 925478 AGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCC 925419 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| || || ||||| |||||| || || || || Sbjct 925418 TCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCT 925359 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| ||| ||| |||| |||||| | || || || || | ||||| ||| Sbjct 925358 TGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTC 925299 Query 199598 TTACCCGT 199605 || || || Sbjct 925298 TTGCCGGT 925291 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || || || || || ||||| |||| ||||||||| | || || Sbjct 925206 CGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTG 925147 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| ||||||||||| | ||||||||||| || ||| || Sbjct 925146 CGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCC 925087 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||||| | | || || || | Sbjct 925086 TCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGG 925027 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 925026 GTGATGGTCTTTCCGGTGA 925008 >seq12 Length=3815900 Score = 113 bits (124), Expect = 1e-19 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| | |||||| || |||||||| |||| ||||||||| | | ||| Sbjct 2951391 CGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTG 2951450 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| || |||||||||||||||||||| ||||||||||||||||| Sbjct 2951451 CGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGG 2951500 >seq26 Length=2547288 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||||| |||| ||||||||| | || ||| | ||||| Sbjct 1485406 AGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 1485465 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||||||||||||||| || ||||| |||||||| ||| || || ||| Sbjct 1485466 TCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 1485525 Query 199538 TGAATCTT 199545 || ||||| Sbjct 1485526 TGGATCTT 1485533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921192166809