Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq23 154 2e-32
seq26 105 8e-18
seq12 98.7 1e-15
>seq23
Length=2828041
Score = 154 bits (170), Expect = 2e-32
Identities = 166/217 (76%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| || | ||| |||||||||||| ||||||||||| ||||| || |
Sbjct 925710 ACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCC 925651
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || | |||||| |||||||| || | ||||| ||||| | || | | ||||||
Sbjct 925650 GTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTT 925591
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCCACCGTGA 46556
||| ||||||| ||||| ||| | || |||||||| |||||||| || | |||||
Sbjct 925590 GTCTTGGATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGA 925532
Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| ||||| ||||| || || || |||||||||||
Sbjct 925531 TGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495
Score = 123 bits (136), Expect = 3e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||| | || ||||||| ||| ||||| ||||| |||||||||||
Sbjct 925212 CCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 925153
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| ||||| | || || ||||||||||||||||| ||||||||||||||||| | ||
Sbjct 925152 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 925093
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
| || |||||||||| |||||| ||||||
Sbjct 925092 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGA 925062
Score = 120 bits (132), Expect = 3e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||| | ||||| || | ||| |||||| ||||| |||||||| || || || || |
Sbjct 925938 ACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCC 925879
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
||| || |||||||| || ||||| || | ||||||||||| | || | | ||||||
Sbjct 925878 GTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTT 925819
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| |||||| ||| | | | | ||||||||| || || || |||| || ||
Sbjct 925818 GTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAAT 925759
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || || || || || |||||||| |||||
Sbjct 925758 GGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 925723
Score = 107 bits (118), Expect = 2e-18
Identities = 138/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| || |||| ||| |||||| || || ||||||||||| || ||||| |||| |||
Sbjct 925475 ACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 925416
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||| |||||||| || | ||| ||||| || | || | || ||||||||| |
Sbjct 925415 AGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGG 925356
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| ||||| ||| | | | |||||| || || || || | |||||||| ||
Sbjct 925355 ATCTTTGACTTGA-CGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTT 925297
Query 46564 GCCCGTCA 46571
||| ||||
Sbjct 925296 GCCGGTCA 925289
>seq26
Length=2547288
Score = 105 bits (116), Expect = 8e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| | || ||||| ||||| ||||||||
Sbjct 1485426 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAA 1485485
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517
|||| |||||| ||||| | || | || |||||||||| |||||| |||||
Sbjct 1485486 GATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA 1485541
>seq12
Length=3815900
Score = 98.7 bits (108), Expect = 1e-15
Identities = 81/99 (82%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || |||||||| | || ||||||||||| ||||||||
Sbjct 2951420 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAA 2951479
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|||| ||||||||||| | || | || |||||||||
Sbjct 2951480 GATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 2951518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238209232040
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