Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq21 333 3e-86
seq23 132 5e-26
seq26 89.7 5e-13
>seq21
Length=3333843
Score = 333 bits (368), Expect = 3e-86
Identities = 588/846 (70%), Gaps = 17/846 (2%)
Strand=Plus/Plus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
|| || || ||||| || ||||| || || || || || || ||| |||||| |
Sbjct 2203341 TTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTC 2203400
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACG 132720
||| || || |||||||||| | || |||| |||| |||||| || | ||
Sbjct 2203401 TCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAG--GGCCAAC- 2203457
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779
||||| | ||| || ||||||||||||||||| ||||| | | || | | | || ||
Sbjct 2203458 AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATG-CCGAG 2203516
Query 132780 CAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838
|||| |||| || || || ||| | | || ||||| || |||| || || ||||
Sbjct 2203517 CAGAGCGCAT-GGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGA 2203575
Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898
||| | || || | | | ||| ||| | | | | | ||| | | ||| |
Sbjct 2203576 TGATAGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGAAGAGAAGGCAGG 2203635
Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958
| |||||| |||| ||||||||| | ||| ||||| |||||| ||| || | ||||
Sbjct 2203636 CGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGG 2203695
Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018
|||| || ||||| || |||||||| || |||| ||||||| || ||||||| |
Sbjct 2203696 GCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATAC 2203755
Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078
|||| || || ||||| || || ||||| | | |||| |||| | ||| || |||||
Sbjct 2203756 CCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGGAGATCC 2203815
Query 133079 AGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138
| ||||| ||||| |||||||| | || ||| || || | ||||||||||| | |
Sbjct 2203816 ATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGA--A 2203873
Query 133139 AACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTC 133196
| | | | | || | || ||| | ||| ||||||||||| || || | ||
Sbjct 2203874 GAGGTACCTGCGCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAGGTCTC 2203933
Query 133197 CGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTG 133256
||||| ||||||||||| |||||| || ||||| ||||| || |||||| | ||
Sbjct 2203934 TGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTG 2203993
Query 133257 CACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAA 133316
||||| || ||| ||||| || || || |||||||| ||||| ||| ||| |||||
Sbjct 2203994 TACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAA 2204053
Query 133317 AAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAGTC 133373
||||| || ||||| |||||| |||||||| ||||| | ||| | ||||||
Sbjct 2204054 GAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTCCAGTC 2204113
Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433
| | ||||||||| ||||| | |||||| ||||||| || || |||||||| || ||
Sbjct 2204114 GTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCTT 2204173
Query 133434 GTACAT 133439
||||||
Sbjct 2204174 GTACAT 2204179
>seq23
Length=2828041
Score = 132 bits (146), Expect = 5e-26
Identities = 161/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || ||||| |||||||| |||| || || | | |
Sbjct 925495 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 925554
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || || |||| ||||| ||||| ||||| | |||||
Sbjct 925555 GACACTATTGACAACG-TCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCA 925613
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| || || ||| |||| |||| || || ||| |||||||||
Sbjct 925614 ACAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAA 925673
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||||||| | || || || |||||||| |||
Sbjct 925674 CATCCAAAAGGAGTCCACACTTCACTTGGTGCTTCGT 925710
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || || || ||||| || | || |||||| | | |
Sbjct 925723 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 925782
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| || | | ||||| || |||| ||||| ||||| || || | |||||
Sbjct 925783 GACA-CGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCA 925841
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||||| ||| || || |||||||| |||| || || ||| ||||||||
Sbjct 925842 GCAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAA 925901
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| | || || || |||||||| ||| | | |||||
Sbjct 925902 CATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGTCTTCGTGGCGG 925949
Score = 105 bits (116), Expect = 7e-18
Identities = 143/196 (73%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| || || ||||||||| |||| || ||| | | |||| | | || | | ||
Sbjct 925008 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATG--TCAA 925065
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || |||| ||||| ||||| |||||| | ||||| ||||| | || | ||| ||
Sbjct 925066 GAGCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGG 925125
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
||| ||||| || || | |||||||| ||||||||||||||| |||||| | || ||
Sbjct 925126 CAAGCAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCT 925185
Query 38444 GCATTTGGTGCTGCGT 38459
|||| | || || |||
Sbjct 925186 GCATCTCGTCCTCCGT 925201
>seq26
Length=2547288
Score = 89.7 bits (98), Expect = 5e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| |||||| | ||||||||||| || || | ||| || ||
Sbjct 1485533 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTGATCTTCGCCGGAAAG 1485474
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || || | ||||| || ||||||||||||||| ||||| | || || ||
Sbjct 1485473 CAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACCCTCCAC 1485414
Query 38448 TTGGTGCTGCGT 38459
||||| || |||
Sbjct 1485413 TTGGTCCTCCGT 1485402
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172631191680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |