Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq23 345 5e-90
seq22 143 3e-29
seq21 134 2e-26
seq1 118 1e-21
>seq23
Length=2828041
Score = 345 bits (382), Expect = 5e-90
Identities = 686/1011 (68%), Gaps = 5/1011 (0%)
Strand=Plus/Plus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | | ||| || || ||||| | || ||||| ||||| ||||||||||||||
Sbjct 525731 TCACCAGACAGGATAGCAGCCTGGACGGCGGCACCGTAGGCGACAGCCTCATCGGGGTTG 525790
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || | || || ||||| || | || || | ||| | || | || |||
Sbjct 525791 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 525850
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || |||||||||||||| || || || | || || || |||||||| |
Sbjct 525851 ATACGGGTGGATCCACCGACCAAGACAATCTCGTGGACGGAGGACTTGTCGATCTTAGCA 525910
Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249
|| || || ||||| || ||||| ||||| | |||| || || ||
Sbjct 525911 TCGCGGAGGACACGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCT 525970
Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309
|| ||||| |||||||| ||| || ||||| || | || ||||| | || || ||
Sbjct 525971 TCGAAACGAGCACGGGTGATGCTGGTGTAGAAGTCGATACCCTCGTACAGGGAGTCGATC 526030
Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369
|| |||| || || || | || || | || ||||| || | ||| || || |||||
Sbjct 526031 TCGATGGAGGTCTGAGCGGAAGAGGACAGAGTGCGCTTGGCCCTCTCGCAAGCGGTTCGG 526090
Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429
| |||||| || ||||| | ||| || | || ||||| || ||||| || |||||
Sbjct 526091 AGACGACGGAGAGCACGAGCGTTGGAGGTCAAGTCCTTCTTGTGCTTACGCTTGAACTCG 526150
Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489
| | |||||| | ||| | ||||| || |||||||||||||| || || ||
Sbjct 526151 TTGGTGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCG 526210
Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549
|| || | ||||| || |||||||| | || ||| | || | || ||||| || |||
Sbjct 526211 GCAGTGGACTTGACCTCGAAGATACCCTCCTCGATGGTCAAGAGGGAGACATCGAAGGTA 526270
Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609
|||||||||| ||| || || || ||||| || | || | ||||| || ||||||
Sbjct 526271 CCACCACCCAAGTCGAAGATAAGGACGTTGCGCTCACCCTCGGTCTTCTTGTCAAGACCG 526330
Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669
|| ||||| || || || || || || || || ||||| || ||| ||||| |||||
Sbjct 526331 TAGGCGATGGCAGCGGCAGTAGGCTCGTTGATGATACGGAGGACGTTGAGGCCGGCAATG 526390
Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729
| ||||| || || || || |||||||| ||||| ||||| || || || || |||
Sbjct 526391 AGACCAGCATCCTTGGTAGCCTGACGTTGCGAGTCGTTGAAGTATGCGGGAACAGTGACG 526450
Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789
|| |||| | || | |||||| || || || || | || |||| ||||| |
Sbjct 526451 ACAGCGTTGTTAACGGTGCCACCGAGGTAGGACTCGGCAGTTTCCCTCATCTTGGTCAAG 526510
Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTC 7848
||||| ||||| ||||| || | | || ||| ||| || || || || || || |
Sbjct 526511 ACCATAGATGAGATCTCCTCGGGTGTGAA-TGTCTTCTCCTCGCCCTTGAACTCGACCTG 526569
Query 7849 AATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908
|| | || || |||| | | ||| ||||| | | | | ||||| ||| |
Sbjct 526570 GATAACTGGCTT-GCCGC--CCTTGTCGATGACCTTGAAGGGGAAGTGCTTCATGTCGGC 526626
Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968
||||||| ||| | ||||| | ||||| || |||||||| || || || |||||
Sbjct 526627 CTGGACCTCAGCGTCGGCGAACTTGCGACCGATGAGGCGCTTTGCGTCGAAGACGGTGTT 526686
Query 7969 TTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019
|||||||||||| ||||||||| || | ||| || || ||||| ||
Sbjct 526687 GACGGGGTTCATGGCGACTTGGTTCTTTGCGGAGTCACCAATGAGACGCTC 526737
>seq22
Length=2852027
Score = 143 bits (158), Expect = 3e-29
Identities = 241/348 (69%), Gaps = 3/348 (1%)
Strand=Plus/Minus
Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494
|||||| |||||| | | ||||| || | |||||||||||| || || || || ||
Sbjct 344768 GAAGTGGTCAAGGAGGTTAGTGTCGAAGTCCTGACCACCCAAGTGGGTGTCTCCAGCAGT 344709
Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554
|| ||||| || | ||| || | |||| | | || ||||| || ||||||||
Sbjct 344708 AGCCTTGACGGTGAAAACACCACCCTGGATGTGCAGAAGAGAGACATCGAAAGTACCACC 344649
Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT---ATCGAGACCGTA 7611
||| || || | ||||| |||||| | || | ||| || | ||||||||||
Sbjct 344648 ACCAAGATCGTAGATGAGGACGTTCCTCTCCTTGTCAGACTTTCCGGAACCGAGACCGTA 344589
Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671
|||||||| || || || || || || || ||||| ||| ||| ||||||||||| |
Sbjct 344588 GGCGATAGCGGCGGCGGTGGGCTCGTTGATGATACGGAGAACGTTGAGGCCAGCAATGGC 344529
Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731
| || || || || ||||| || || ||||| |||||||| ||||| || | |||
Sbjct 344528 ACCGGCGTCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTGATGAC 344469
Query 7732 CGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779
|| | | ||| ||||| ||||| | | || |||| || |||||
Sbjct 344468 GGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCAGCGACCTCCTTCAT 344421
>seq21
Length=3333843
Score = 134 bits (148), Expect = 2e-26
Identities = 402/615 (65%), Gaps = 9/615 (1%)
Strand=Plus/Plus
Query 105462 TTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGC 105521
|||||| ||||||| ||| |||| || |||| |||||| || || | || ||
Sbjct 607672 TTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCA 607731
Query 105522 CTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATC 105581
|| | || || | || || ||| || || | | || || || |||||||| | ||
Sbjct 607732 CTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTC 607791
Query 105582 TGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAA 105641
|||||||||| || | ||||| || ||| | |||| || | || || |||
Sbjct 607792 AGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTT 607851
Query 105642 ACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGA 105701
|| | || || ||| | | | || ||||||||||| |||| |||| || | |
Sbjct 607852 GCGCAGGTCAAGGAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGC 607911
Query 105702 CCCTTTACGAC----GCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTA 105757
||| ||| ||| | || | | |||||| | || || ||| || || || |
Sbjct 607912 ACCTGGACGCTTGTTGCCACCCTGG-TCGACATAGCGAGCAGTGTTGTTGTATACACGGA 607970
Query 105758 ACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCAC 105817
||| ||||| | ||| | |||||||| || || |||| || | ||| | | ||||
Sbjct 607971 GCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCAC 608030
Query 105818 GTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTT 105877
| | ||| |||| | |||||||| ||||| ||| ||| |||||| |
Sbjct 608031 GAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCT 608090
Query 105878 TTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATG 105937
| | ||| |||||||| ||||||||||| || ||||| | | || ||||| || || |
Sbjct 608091 TGAGTGTGTCGTAAATGCCGTCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACG 608150
Query 105938 ACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAAC 105997
||||||| ||| ||||| || || ||||||| || || | || || |||| |
Sbjct 608151 ACATTTGCGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA-- 608208
Query 105998 CTTTCGATA-ACG-CTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACC 106055
|||| || | | | ||||| || || | | | | || || || | || ||||| ||
Sbjct 608209 CTTTTGAGACATGTAGTCGTAGGTCTCGATGGCTTTCTCGATGTCATCACCGTGAATGCC 608268
Query 106056 AATAGCGACGCGCAT 106070
|| ||| || |||||
Sbjct 608269 AACAGCAACACGCAT 608283
>seq1
Length=3968015
Score = 118 bits (130), Expect = 1e-21
Identities = 224/328 (68%), Gaps = 10/328 (3%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
||||| || |||||||| | ||| || || || ||| | ||||| || |||| |||
Sbjct 686257 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCGTTGGTAGACTTGACCTCGAAGACACCA 686198
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| | ||| | | | || | ||| || ||||||||||||| || | | ||||
Sbjct 686197 GCCTGAATCTCGAGAATGGAGATATCGAAAGTACCACCACCCAAATCGTAGACAGCTACG 686138
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
||| ||| || ||| || |||||||| |||| ||| || || || |||||
Sbjct 686137 ------ACGTTGTCGGTGGCCTTGTCAAGACCGTAGGCGAGAGCGGCAGCGGTGGGTTCG 686084
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTGTC 7694
|| | | ||| ||| ||| || ||||| || ||| | || || || || ||||| |
Sbjct 686083 TTGACGACACGGAGAACGTTGAGACCAGCGAT--TTGACCAGCGTCCTTGGTAGCTTGAC 686026
Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754
| || || ||||| |||||||| ||||| || ||||| |||| | |||| ||||| || |
Sbjct 686025 GCTGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGACGTTCTTGCCCA 685966
Query 7755 GATACGATTCCGCGATATCTTTCATTTT 7782
|| || || || | || ||||| ||
Sbjct 685965 TGTATGACTCGGCAGTCTCCTTCATCTT 685938
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132585642680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |