Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq23 345 5e-90 seq22 143 3e-29 seq21 134 2e-26 seq1 118 1e-21 >seq23 Length=2828041 Score = 345 bits (382), Expect = 5e-90 Identities = 686/1011 (68%), Gaps = 5/1011 (0%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| || || ||||| | || ||||| ||||| |||||||||||||| Sbjct 525731 TCACCAGACAGGATAGCAGCCTGGACGGCGGCACCGTAGGCGACAGCCTCATCGGGGTTG 525790 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || | || || | ||| | || | || ||| Sbjct 525791 ATGGACTTGTTGGGCTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 525850 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || |||||||||||||| || || || | || || || |||||||| | Sbjct 525851 ATACGGGTGGATCCACCGACCAAGACAATCTCGTGGACGGAGGACTTGTCGATCTTAGCA 525910 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || ||||| || ||||| ||||| | |||| || || || Sbjct 525911 TCGCGGAGGACACGCTCGACGGGCTCCATGGTGGAGCGGAAGAGGTCCTGGCAGAGCTCT 525970 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || ||||| |||||||| ||| || ||||| || | || ||||| | || || || Sbjct 525971 TCGAAACGAGCACGGGTGATGCTGGTGTAGAAGTCGATACCCTCGTACAGGGAGTCGATC 526030 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | || || | || ||||| || | ||| || || ||||| Sbjct 526031 TCGATGGAGGTCTGAGCGGAAGAGGACAGAGTGCGCTTGGCCCTCTCGCAAGCGGTTCGG 526090 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | |||||| || ||||| | ||| || | || ||||| || ||||| || ||||| Sbjct 526091 AGACGACGGAGAGCACGAGCGTTGGAGGTCAAGTCCTTCTTGTGCTTACGCTTGAACTCG 526150 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | | |||||| | ||| | ||||| || |||||||||||||| || || || Sbjct 526151 TTGGTGAAGTGGTTGACGAGACGGTTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCG 526210 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 || || | ||||| || |||||||| | || ||| | || | || ||||| || ||| Sbjct 526211 GCAGTGGACTTGACCTCGAAGATACCCTCCTCGATGGTCAAGAGGGAGACATCGAAGGTA 526270 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 |||||||||| ||| || || || ||||| || | || | ||||| || |||||| Sbjct 526271 CCACCACCCAAGTCGAAGATAAGGACGTTGCGCTCACCCTCGGTCTTCTTGTCAAGACCG 526330 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 || ||||| || || || || || || || || ||||| || ||| ||||| ||||| Sbjct 526331 TAGGCGATGGCAGCGGCAGTAGGCTCGTTGATGATACGGAGGACGTTGAGGCCGGCAATG 526390 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | ||||| || || || || |||||||| ||||| ||||| || || || || ||| Sbjct 526391 AGACCAGCATCCTTGGTAGCCTGACGTTGCGAGTCGTTGAAGTATGCGGGAACAGTGACG 526450 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| | || | |||||| || || || || | || |||| ||||| | Sbjct 526451 ACAGCGTTGTTAACGGTGCCACCGAGGTAGGACTCGGCAGTTTCCCTCATCTTGGTCAAG 526510 Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTC 7848 ||||| ||||| ||||| || | | || ||| ||| || || || || || || | Sbjct 526511 ACCATAGATGAGATCTCCTCGGGTGTGAA-TGTCTTCTCCTCGCCCTTGAACTCGACCTG 526569 Query 7849 AATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908 || | || || |||| | | ||| ||||| | | | | ||||| ||| | Sbjct 526570 GATAACTGGCTT-GCCGC--CCTTGTCGATGACCTTGAAGGGGAAGTGCTTCATGTCGGC 526626 Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968 ||||||| ||| | ||||| | ||||| || |||||||| || || || ||||| Sbjct 526627 CTGGACCTCAGCGTCGGCGAACTTGCGACCGATGAGGCGCTTTGCGTCGAAGACGGTGTT 526686 Query 7969 TTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTC 8019 |||||||||||| ||||||||| || | ||| || || ||||| || Sbjct 526687 GACGGGGTTCATGGCGACTTGGTTCTTTGCGGAGTCACCAATGAGACGCTC 526737 >seq22 Length=2852027 Score = 143 bits (158), Expect = 3e-29 Identities = 241/348 (69%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 |||||| |||||| | | ||||| || | |||||||||||| || || || || || Sbjct 344768 GAAGTGGTCAAGGAGGTTAGTGTCGAAGTCCTGACCACCCAAGTGGGTGTCTCCAGCAGT 344709 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 || ||||| || | ||| || | |||| | | || ||||| || |||||||| Sbjct 344708 AGCCTTGACGGTGAAAACACCACCCTGGATGTGCAGAAGAGAGACATCGAAAGTACCACC 344649 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTT---ATCGAGACCGTA 7611 ||| || || | ||||| |||||| | || | ||| || | |||||||||| Sbjct 344648 ACCAAGATCGTAGATGAGGACGTTCCTCTCCTTGTCAGACTTTCCGGAACCGAGACCGTA 344589 Query 7612 CGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGT 7671 |||||||| || || || || || || || ||||| ||| ||| ||||||||||| | Sbjct 344588 GGCGATAGCGGCGGCGGTGGGCTCGTTGATGATACGGAGAACGTTGAGGCCAGCAATGGC 344529 Query 7672 TGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGAC 7731 | || || || || ||||| || || ||||| |||||||| ||||| || | ||| Sbjct 344528 ACCGGCGTCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGCGGGGACGGTGATGAC 344469 Query 7732 CGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || | | ||| ||||| ||||| | | || |||| || ||||| Sbjct 344468 GGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCAGCGACCTCCTTCAT 344421 >seq21 Length=3333843 Score = 134 bits (148), Expect = 2e-26 Identities = 402/615 (65%), Gaps = 9/615 (1%) Strand=Plus/Plus Query 105462 TTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGC 105521 |||||| ||||||| ||| |||| || |||| |||||| || || | || || Sbjct 607672 TTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCA 607731 Query 105522 CTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATC 105581 || | || || | || || ||| || || | | || || || |||||||| | || Sbjct 607732 CTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTC 607791 Query 105582 TGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAA 105641 |||||||||| || | ||||| || ||| | |||| || | || || ||| Sbjct 607792 AGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTT 607851 Query 105642 ACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGA 105701 || | || || ||| | | | || ||||||||||| |||| |||| || | | Sbjct 607852 GCGCAGGTCAAGGAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGC 607911 Query 105702 CCCTTTACGAC----GCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTA 105757 ||| ||| ||| | || | | |||||| | || || ||| || || || | Sbjct 607912 ACCTGGACGCTTGTTGCCACCCTGG-TCGACATAGCGAGCAGTGTTGTTGTATACACGGA 607970 Query 105758 ACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCAC 105817 ||| ||||| | ||| | |||||||| || || |||| || | ||| | | |||| Sbjct 607971 GCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCAC 608030 Query 105818 GTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTT 105877 | | ||| |||| | |||||||| ||||| ||| ||| |||||| | Sbjct 608031 GAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCT 608090 Query 105878 TTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATG 105937 | | ||| |||||||| ||||||||||| || ||||| | | || ||||| || || | Sbjct 608091 TGAGTGTGTCGTAAATGCCGTCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACG 608150 Query 105938 ACATTTGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAAC 105997 ||||||| ||| ||||| || || ||||||| || || | || || |||| | Sbjct 608151 ACATTTGCGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA-- 608208 Query 105998 CTTTCGATA-ACG-CTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACC 106055 |||| || | | | ||||| || || | | | | || || || | || ||||| || Sbjct 608209 CTTTTGAGACATGTAGTCGTAGGTCTCGATGGCTTTCTCGATGTCATCACCGTGAATGCC 608268 Query 106056 AATAGCGACGCGCAT 106070 || ||| || ||||| Sbjct 608269 AACAGCAACACGCAT 608283 >seq1 Length=3968015 Score = 118 bits (130), Expect = 1e-21 Identities = 224/328 (68%), Gaps = 10/328 (3%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||| | ||| || || || ||| | ||||| || |||| ||| Sbjct 686257 TCGAAGTCCTCACCACCAAGGTGAGTGTCACCGTTGGTAGACTTGACCTCGAAGACACCA 686198 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | | ||| | | | || | ||| || ||||||||||||| || | | |||| Sbjct 686197 GCCTGAATCTCGAGAATGGAGATATCGAAAGTACCACCACCCAAATCGTAGACAGCTACG 686138 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| ||| || ||| || |||||||| |||| ||| || || || ||||| Sbjct 686137 ------ACGTTGTCGGTGGCCTTGTCAAGACCGTAGGCGAGAGCGGCAGCGGTGGGTTCG 686084 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTGTC 7694 || | | ||| ||| ||| || ||||| || ||| | || || || || ||||| | Sbjct 686083 TTGACGACACGGAGAACGTTGAGACCAGCGAT--TTGACCAGCGTCCTTGGTAGCTTGAC 686026 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | || || ||||| |||||||| ||||| || ||||| |||| | |||| ||||| || | Sbjct 686025 GCTGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTTCTTGACGTTCTTGCCCA 685966 Query 7755 GATACGATTCCGCGATATCTTTCATTTT 7782 || || || || | || ||||| || Sbjct 685965 TGTATGACTCGGCAGTCTCCTTCATCTT 685938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132585642680