Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq21 233 2e-56 >seq21 Length=3333843 Score = 233 bits (258), Expect = 2e-56 Identities = 1112/1744 (64%), Gaps = 41/1744 (2%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 |||||| ||||| ||||||| || || | || || || || || || || || | Sbjct 608299 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATCGAGAAAGC 608240 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| |||||| | ||||| | ||| |||| ||||| | || || | | Sbjct 608239 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 608181 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || |||||| ||| |||||||| || ||||| || | | ||||||| Sbjct 608180 TCAACGCGGGCACACCATCACCGCAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 608121 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | ||| | |||||||||| ||| |||| ||||| ||||| ||| |||| Sbjct 608120 ACAGTATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 608061 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 | ||||| || | || | || | | || | | ||| || | | || || Sbjct 608060 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACT--GGCTCATACATCGGTGGCAC 608003 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || ||| | ||| | ||||| ||||| || |||| ||| ||| || ||||| Sbjct 608002 TAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 607943 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 ||| |||| | ||| ||||| ||| || |||| |||| || |||||||| Sbjct 607942 TGTCGACCAGGGTGGCAACAAGCGTCC--AGGTGCCT-TCGCCATCTACCTAGAGCCATG 607886 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CG 112079 |||||| || || | | |||||||| |||| ||||| || | ||||||| || Sbjct 607885 GCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG 607826 Query 112080 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 112139 || | ||||||||||||| |||||| |||||||| || |||||||||||| | || | Sbjct 607825 CGCT--CGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAA 607768 Query 112140 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 || | ||||| ||| | || | || || || || || || ||| |||||| | Sbjct 607767 GACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTAC 607708 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACG--AGGAAGAAAGTCGGGCGACTGCGA 112257 ||||| || || ||||| || ||| | |||| | | |||| || || | || Sbjct 607707 GGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGAAAAGCAGAACAAGGGTCG--CGAGA 607650 Query 112258 CGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 112317 | || | || | | ||| | || || || || | || ||||||||||||| | Sbjct 607649 CTGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACC 607590 Query 112318 CATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 112377 | | |||||| ||||| ||||| || |||| ||||| || || ||||| | ||| | Sbjct 607589 CCTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCA 607530 Query 112378 TCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 112437 || || |||||||| || || || || |||| | || | |||||| |||| Sbjct 607529 TCCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTG 607470 Query 112438 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTT 112496 | || ||| | || || | || || || | ||| || | || || | ||| Sbjct 607469 TTTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACA-AGGCCGGCGTGTTT 607411 Query 112497 GATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATT 112556 || | | || ||||||||||| || | ||||| ||| | |||| | || Sbjct 607410 GACTTCAAGAAGCTCCACGAAGTCACACAGGTCGTCACCCGCAACTTGAACAAGATCATC 607351 Query 112557 GATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 || || ||||| || || || || || | | ||||| || || Sbjct 607350 GAGGTCAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATC 607291 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676 ||| | ||||| |||||||| || |||| ||| | |||| | || || || Sbjct 607290 GGTATGGGTGTTCAAGGTCTTGCCGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCA 607231 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 |||||||| ||| | |||| | || || ||||| || || || || ||||| Sbjct 607230 GACGAAGCTAAGAAGCTCAACATCCAAATCTTCGAGACCATCTACCATGCTGCTCTCACT 607171 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 | | || | ||| ||| ||| || || | |||| || || ||||| | Sbjct 607170 TCCTCATGCGACATCGCAAAGGAACTTGGCCCTTACAAGACCTACGAAGGATCTCCCGTA 607111 Query 112797 TCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACT 112854 || || || | || || | ||||||| |||| || | ||| | || | || |||| Sbjct 607110 TCCCAGGGTATCCTCCAGTACGATATGT-GGAATGTCACACCTA-CTGACCTCTGGGACT 607053 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 ||| |||| ||||| || ||| | ||| | || ||| || | || |||| Sbjct 607052 GGGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGCAACTCGCTGCTCATTGCAC 606993 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | |||||||| |||||||| |||| || |||| || || || ||||| || || |||| Sbjct 606992 CCATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACA 606933 Query 112975 CGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT- 113033 | | ||||||||| | | |||||| || ||||| | |||||||| ||| Sbjct 606932 CCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAAC--CCATG 606875 Query 113034 -CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGT 113092 | | | ||||| || || ||||| ||||| || | |||||| | | || | Sbjct 606874 GTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCAT 606815 Query 113093 GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTA 113152 | || ||||| ||| | ||| | || || || || | |||| | || Sbjct 606814 CGCCGATGGAGGTTCTATTGCCAGGATTCCCAACATCCCTGAGGAGACAAAGACTCTTTA 606755 Query 113153 CCGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCATTGACATGGCCGCAGATCGTGGT 113210 | || || ||||| ||| | |||||| ||||||| |||||||| || |||||| Sbjct 606754 CAAGACCGTCTGGGAGATCTCGCAGCGAAGGA--TCATTGAGATGGCCGCTGACCGTGGT 606697 Query 113211 CGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCA 113268 |||||||| | |||| ||| | || | |||| | || || ||| || Sbjct 606696 GCTTTCATTGACC--AGTCTCAGTCGCTAAACATCCACATGAAGGAGCCTACTATGGGCA 606639 Query 113269 AGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACC 113328 || || ||||||||||| | | |||||| ||||| || || || ||||| || | Sbjct 606638 AGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTGAAGACTGGCATGTACTATC 606579 Query 113329 TCCG 113332 |||| Sbjct 606578 TCCG 606575 Score = 125 bits (138), Expect = 9e-24 Identities = 292/438 (67%), Gaps = 2/438 (0%) Strand=Plus/Minus Query 102183 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 102242 || ||| | ||||| || ||||||||||||||||||| ||||| ||| | | || Sbjct 2203783 CGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATC 2203724 Query 102243 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 102302 | |||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||| Sbjct 2203723 TTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCC 2203664 Query 102303 CGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAA 102362 ||||||||||| | ||| || || || || ||| | | | || Sbjct 2203663 CGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAG 2203604 Query 102363 CCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGATTC 102422 || | | ||| || | |||| | | |||||||| ||||||||| ||| ||| Sbjct 2203603 CCCAGCCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTC 2203544 Query 102423 ATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAGATGTCCGAATAT 102482 | || || || ||||||||||| |||| ||||| || |||| | |||| Sbjct 2203543 TTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATAC 2203484 Query 102483 ATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCA-ATTTGGAACTC 102541 || |||| || |||| | || || | || || | || | | | || | Sbjct 2203483 ATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTC-GGCAACGTCAAGGTCTACCACGC 2203425 Query 102542 CAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGA 102601 || || || || |||||||||||||||||| || | || ||||| ||||||||||| Sbjct 2203424 CACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGA 2203365 Query 102602 AAAGAGGGTTGGGGACTA 102619 ||| | || || ||||| Sbjct 2203364 GAAGCGCGTCGGCGACTA 2203347 Score = 89.7 bits (98), Expect = 6e-13 Identities = 219/326 (67%), Gaps = 21/326 (6%) Strand=Plus/Plus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || || ||||||||||| | | |||||| | |||| ||| || |||||||| | Sbjct 942136 AATCCGTCCATCTCTGTTAGGATCTGGTTGAGAGTTGCTTCTCGCTCATCATTGCC---- 942191 Query 16035 ATACCACC--AGCACTGCGTTGCTTTCCCACGGCA-------TCAATCTCATCAATGAAG 16085 |||||| || |||| | | | |||||| |||||||||||||||||| Sbjct 942192 --ACCACCGAAGTTCTGCTTCGATCGGGCACGGCCGATAGCGTCAATCTCATCAATGAAG 942249 Query 16086 ACGATGCATGGT-TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 16144 | |||||| || || | || ||| || | || | || || |||||| || || Sbjct 942250 ATGATGCAGGGCGTGCTCTT-GCGCGCATTGGCGAACAAGTCTCGGACACGCGATGCACC 942308 Query 16145 CACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAACATTGGATGAAGGGGACATTA 16202 |||||||| |||||||| || || | | | | || || || | ||| || || Sbjct 942309 AACACCAACGAACATCTCGACGAACTCAGAACCACTGA-CACTGAA-GAAAGGAACGCCT 942366 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 16262 || || |||||| | || ||| |||||||||||||| |||||||| || | ||| Sbjct 942367 GACTCTCCCGCAGTAGCCTTGGCAAGAAGAGTCTTACCAGTACCTGGGGATCCAGATAGG 942426 Query 16263 AGGGCACCTCGTGGAATCTTGGCGCC 16288 | ||||| || || ||||| || || Sbjct 942427 ATAGCACCGCGAGGGATCTTCGCACC 942452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742190499440