Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq21 181 1e-40 seq26 86.0 7e-12 seq25 86.0 7e-12 seq23 86.0 7e-12 seq3 86.0 7e-12 >seq21 Length=3333843 Score = 181 bits (200), Expect = 1e-40 Identities = 1095/1744 (63%), Gaps = 37/1744 (2%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466 || ||||| ||||| || || || |||||||||||||| || || | ||||| |||| Sbjct 606575 CGGAGATAGTACATGCCAGTCTTCAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 606633 Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526 || ||| | || || || ||| | ||| | |||||||||||| || ||||| Sbjct 606634 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAA 606693 Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG--GCTA-ATTTCCCAGACAGT 109583 |||||| ||||| ||||| || ||||| | || | || | || |||||||| || Sbjct 606694 AGCACCACGGTCAGCGGCCATCTCAATGAT---CCTTCGCTGCGAGATCTCCCAGACGGT 606750 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 |||||| | | |||| | || || || |||| || | |||||| || ||| | Sbjct 606751 CTTGTAAAGAGTCTTTGTCTCCTCAGGGATGTTGGGAATCCTGGCAATAGAACCTCCATC 606810 Query 109644 CTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC--- 109700 | || | | |||||| | | ||||| |||| || | | || | ||| Sbjct 606811 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGAC---CCATGTCGACAAGGTCCTT 606867 Query 109701 -AACAA-GATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758 | ||| ||| |||||| || || |||||||| || || ||| |||||| Sbjct 606868 GAGCAACCATG--GGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATG 606925 Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818 || | ||||| || ||||| ||||| |||||||| || || |||| |||||| || || Sbjct 606926 TTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTT 606985 Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT 109878 |||||||| || ||||| || ||| || | ||| | | | | ||| || Sbjct 606986 GGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGA 607045 Query 109879 GCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGT 109938 | |||| || | | || || || | | ||| ||||||||| || || Sbjct 607046 GACGCCCAGTCCCAGAGGTCAGTA-----GGTGTGA-CATTCCACATATCGTACTGGAGG 607099 Query 109939 ACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998 | ||||| | | ||||| || | | | ||| ||| | || ||| || | Sbjct 607100 ATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGGCCAAGTTCCTTTGCGATG 607159 Query 109999 TCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058 ||| |||| | || || ||||| || || ||||| || || || || | Sbjct 607160 TCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTC 607219 Query 110059 CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGA 110118 || || || | ||||| ||||| | | || |||| || ||||| ||| Sbjct 607220 TTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGA 607279 Query 110119 ACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAA 110178 ||||| | ||| ||||| || || | ||| ||| || || ||| || ||||| Sbjct 607280 ACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAG 607339 Query 110179 AAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGT 110238 |||| ||||||| | || | || || || || |||| ||| ||||| Sbjct 607340 TGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGC 607399 Query 110239 TTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCA 110298 || | | | || ||| | || | | |||| | || || |||| ||| || Sbjct 607400 TTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCC 607459 Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358 | ||||| |||| ||| || ||||||| |||| ||| || || |||| |||| Sbjct 607460 AAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTG 607519 Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418 || || ||| ||| | ||||||||| || ||| |||||| || ||||| ||| Sbjct 607520 GAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAG 607579 Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCG 110478 ||||| | ||| ||||||| || ||||||| || || ||||| | ||| | | Sbjct 607580 AGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGT 607639 Query 110479 GCGGGGACAGTTGCGTTAGCGAGACCT----TCCTCCTCGTACTTGGTGTACAAGTCCTC 110534 ||| | ||||| | |||| | | | || ||||| | ||||| | || Sbjct 607640 GCGCGAACAGT----CTCGCGACCCTTGTTCTGCTTTTCGTAGCTCTCGTACAGAGCTTC 607695 Query 110535 AAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCA 110594 ||||| | ||||| ||||| | || || || || || || | || | ||| Sbjct 607696 GAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCA 607755 Query 110595 ATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAG 110654 || || || | || | ||||||||| |||||||||||||||| || |||| || Sbjct 607756 GTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAG 607815 Query 110655 GTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGAT 110714 || || || |||| || | || ||||| ||| || || | || | | || Sbjct 607816 ATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAAGAC 607875 Query 110715 ATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTG 110771 || | ||||||||| || || |||| |||| || || ||| || |||| Sbjct 607876 GTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTG 607935 Query 110772 GTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTG 110831 || |||||||| || ||| ||| | || | |||||| ||||| | || | ||| Sbjct 607936 GTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGT 607995 Query 110832 ACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAAT 110891 || || || || | || || | | ||||||||| ||| | | | ||||| Sbjct 607996 TCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAAT 608055 Query 110892 ACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAA 110950 ||| || || ||| || ||||| ||| ||||||| | ||||| || || | Sbjct 608056 ACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCT-TGAGTGTGTCGTAAATGCCGTCGA 608114 Query 110951 TCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCG 111010 | || |||| || | || || ||||| || ||||| || || || || |||| Sbjct 608115 TACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCCCG 608174 Query 111011 CATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGT 111070 | ||||| | || || | || || |||| ||| ||||| | || ||| || | Sbjct 608175 CGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCT 608234 Query 111071 CGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATT 111130 ||| || | || | ||||||||| |||| ||||| ||||||| ||| | || Sbjct 608235 CGATGGCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTT 608294 Query 111131 GAGG 111134 | || Sbjct 608295 GTGG 608298 Score = 105 bits (116), Expect = 8e-18 Identities = 273/408 (67%), Gaps = 11/408 (3%) Strand=Plus/Plus Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565 |||||||| || || | | || || | || |||| |||| ||||| ||| | || Sbjct 942049 TCGAAACGGCCGGGTCTCATGAGCGCCTTGTCCAGAACATCGGGTCGGTTAGTACCAGCC 942108 Query 11566 ATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 | || || | ||| ||||| ||| ||| |||||||| ||||| || | ||||||| Sbjct 942109 AGAACGACGACTTGCTCAGTCG---TGTTGAATCCGTCCATCTCTGTTAGGATCTGGTTG 942165 Query 11623 ATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGC--CGAACGCTTCTTACCG 11679 | || ||| |||||||| ||| | | | |||| ||| || ||| Sbjct 942166 AGAGTTGCTTCTCGCTCATCATTGCCACCACCGAAGTTCTGCTTCGATCGGGCACGGCCG 942225 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 | ||||||||||||||| ||||| | ||| || || | | || || | |||| Sbjct 942226 ATAGCGTCAATCTCATCAATGAAGATGATGCAGGGCGTGCTCTTGCGCGCATTGGCGAAC 942285 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA- 11798 | || || |||||| || |||||||| ||||||||||| ||||| | | || Sbjct 942286 AAGTCTCGGACACGCGATGCACCAACACCAACGAACATCTCGACGAACTCAGAACCACTG 942345 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 |||||||| ||| ||||| ||||| || || | || || || ||||||||||| Sbjct 942346 ACACTGAA-GAAAGGAACGCCTGACTCTCCCGCAGTAGCCTTGGCAAGAAGAGTCTTACC 942404 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||| || | |||| || | || || || |||||||| ||||| Sbjct 942405 AGTACCTGGGGATCCAGATAGGATAGCACCGCGAGGGATCTTCGCACC 942452 >seq26 Length=2547288 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 2275788 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 2275847 Query 136777 GGGAACA 136783 | || || Sbjct 2275848 GTGACCA 2275854 >seq25 Length=2555362 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 760283 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 760224 Query 136777 GGGAACA 136783 | || || Sbjct 760223 GTGACCA 760217 >seq23 Length=2828041 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 2656966 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 2656907 Query 136777 GGGAACA 136783 | || || Sbjct 2656906 GTGACCA 2656900 >seq3 Length=1841604 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 81141 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 81082 Query 136777 GGGAACA 136783 | || || Sbjct 81081 GTGACCA 81075 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 405324 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 405383 Query 136777 GGGAACA 136783 | || || Sbjct 405384 GTGACCA 405390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975801220600