Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq21 181 1e-40
seq26 86.0 7e-12
seq25 86.0 7e-12
seq23 86.0 7e-12
seq3 86.0 7e-12
>seq21
Length=3333843
Score = 181 bits (200), Expect = 1e-40
Identities = 1095/1744 (63%), Gaps = 37/1744 (2%)
Strand=Plus/Plus
Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATA-TGCATTGAAGA 109466
|| ||||| ||||| || || || |||||||||||||| || || | ||||| ||||
Sbjct 606575 CGGAGATAGTACATGCCAGTCTTCAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 606633
Query 109467 GAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAA 109526
|| ||| | || || || ||| | ||| | |||||||||||| || |||||
Sbjct 606634 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAA 606693
Query 109527 TCGACCACGATCAGCCGCCATGTCGATGATACACTTTTG--GCTA-ATTTCCCAGACAGT 109583
|||||| ||||| ||||| || ||||| | || | || | || |||||||| ||
Sbjct 606694 AGCACCACGGTCAGCGGCCATCTCAATGAT---CCTTCGCTGCGAGATCTCCCAGACGGT 606750
Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643
|||||| | | |||| | || || || |||| || | |||||| || ||| |
Sbjct 606751 CTTGTAAAGAGTCTTTGTCTCCTCAGGGATGTTGGGAATCCTGGCAATAGAACCTCCATC 606810
Query 109644 CTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC--- 109700
| || | | |||||| | | ||||| |||| || | | || | |||
Sbjct 606811 GGCGATGATACGGTTCTTCATGTTCTCAGACCACAGAC---CCATGTCGACAAGGTCCTT 606867
Query 109701 -AACAA-GATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758
| ||| ||| |||||| || || |||||||| || || ||| ||||||
Sbjct 606868 GAGCAACCATG--GGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATG 606925
Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818
|| | ||||| || ||||| ||||| |||||||| || || |||| |||||| || ||
Sbjct 606926 TTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTT 606985
Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT 109878
|||||||| || ||||| || ||| || | ||| | | | | ||| ||
Sbjct 606986 GGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGA 607045
Query 109879 GCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGT 109938
| |||| || | | || || || | | ||| ||||||||| || ||
Sbjct 607046 GACGCCCAGTCCCAGAGGTCAGTA-----GGTGTGA-CATTCCACATATCGTACTGGAGG 607099
Query 109939 ACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998
| ||||| | | ||||| || | | | ||| ||| | || ||| || |
Sbjct 607100 ATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGGCCAAGTTCCTTTGCGATG 607159
Query 109999 TCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGG 110058
||| |||| | || || ||||| || || ||||| || || || || |
Sbjct 607160 TCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTC 607219
Query 110059 CGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGA 110118
|| || || | ||||| ||||| | | || |||| || ||||| |||
Sbjct 607220 TTAGCTTCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGA 607279
Query 110119 ACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAA 110178
||||| | ||| ||||| || || | ||| ||| || || ||| || |||||
Sbjct 607280 ACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAG 607339
Query 110179 AAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGT 110238
|||| ||||||| | || | || || || || |||| ||| |||||
Sbjct 607340 TGGTTGACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGC 607399
Query 110239 TTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCA 110298
|| | | | || ||| | || | | |||| | || || |||| ||| ||
Sbjct 607400 TTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCC 607459
Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358
| ||||| |||| ||| || ||||||| |||| ||| || || |||| ||||
Sbjct 607460 AAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTG 607519
Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418
|| || ||| ||| | ||||||||| || ||| |||||| || ||||| |||
Sbjct 607520 GAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAG 607579
Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCG 110478
||||| | ||| ||||||| || ||||||| || || ||||| | ||| | |
Sbjct 607580 AGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGT 607639
Query 110479 GCGGGGACAGTTGCGTTAGCGAGACCT----TCCTCCTCGTACTTGGTGTACAAGTCCTC 110534
||| | ||||| | |||| | | | || ||||| | ||||| | ||
Sbjct 607640 GCGCGAACAGT----CTCGCGACCCTTGTTCTGCTTTTCGTAGCTCTCGTACAGAGCTTC 607695
Query 110535 AAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCA 110594
||||| | ||||| ||||| | || || || || || || | || | |||
Sbjct 607696 GAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCA 607755
Query 110595 ATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAG 110654
|| || || | || | ||||||||| |||||||||||||||| || |||| ||
Sbjct 607756 GTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAG 607815
Query 110655 GTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGAT 110714
|| || || |||| || | || ||||| ||| || || | || | | ||
Sbjct 607816 ATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAAGAC 607875
Query 110715 ATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTG 110771
|| | ||||||||| || || |||| |||| || || ||| || ||||
Sbjct 607876 GTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTG 607935
Query 110772 GTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTG 110831
|| |||||||| || ||| ||| | || | |||||| ||||| | || | |||
Sbjct 607936 GTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGT 607995
Query 110832 ACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAAT 110891
|| || || || | || || | | ||||||||| ||| | | | |||||
Sbjct 607996 TCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAAT 608055
Query 110892 ACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACCATCAA 110950
||| || || ||| || ||||| ||| ||||||| | ||||| || || |
Sbjct 608056 ACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCT-TGAGTGTGTCGTAAATGCCGTCGA 608114
Query 110951 TCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCG 111010
| || |||| || | || || ||||| || ||||| || || || || ||||
Sbjct 608115 TACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCCCG 608174
Query 111011 CATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTATGTGT 111070
| ||||| | || || | || || |||| ||| ||||| | || ||| || |
Sbjct 608175 CGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCT 608234
Query 111071 CGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATT 111130
||| || | || | ||||||||| |||| ||||| ||||||| ||| | ||
Sbjct 608235 CGATGGCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTT 608294
Query 111131 GAGG 111134
| ||
Sbjct 608295 GTGG 608298
Score = 105 bits (116), Expect = 8e-18
Identities = 273/408 (67%), Gaps = 11/408 (3%)
Strand=Plus/Plus
Query 11506 TCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGCA 11565
|||||||| || || | | || || | || |||| |||| ||||| ||| | ||
Sbjct 942049 TCGAAACGGCCGGGTCTCATGAGCGCCTTGTCCAGAACATCGGGTCGGTTAGTACCAGCC 942108
Query 11566 ATGACTACAA--TGC-CAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622
| || || | ||| ||||| ||| ||| |||||||| ||||| || | |||||||
Sbjct 942109 AGAACGACGACTTGCTCAGTCG---TGTTGAATCCGTCCATCTCTGTTAGGATCTGGTTG 942165
Query 11623 ATCGTCTGTTCACGCTCATCGTTGG-AGGGCATACCACCTGC--CGAACGCTTCTTACCG 11679
| || ||| |||||||| ||| | | | |||| ||| || |||
Sbjct 942166 AGAGTTGCTTCTCGCTCATCATTGCCACCACCGAAGTTCTGCTTCGATCGGGCACGGCCG 942225
Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739
| ||||||||||||||| ||||| | ||| || || | | || || | ||||
Sbjct 942226 ATAGCGTCAATCTCATCAATGAAGATGATGCAGGGCGTGCTCTTGCGCGCATTGGCGAAC 942285
Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGA- 11798
| || || |||||| || |||||||| ||||||||||| ||||| | | ||
Sbjct 942286 AAGTCTCGGACACGCGATGCACCAACACCAACGAACATCTCGACGAACTCAGAACCACTG 942345
Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858
|||||||| ||| ||||| ||||| || || | || || || |||||||||||
Sbjct 942346 ACACTGAA-GAAAGGAACGCCTGACTCTCCCGCAGTAGCCTTGGCAAGAAGAGTCTTACC 942404
Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906
||||| || | |||| || | || || || |||||||| |||||
Sbjct 942405 AGTACCTGGGGATCCAGATAGGATAGCACCGCGAGGGATCTTCGCACC 942452
>seq26
Length=2547288
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 2275788 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 2275847
Query 136777 GGGAACA 136783
| || ||
Sbjct 2275848 GTGACCA 2275854
>seq25
Length=2555362
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 760283 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 760224
Query 136777 GGGAACA 136783
| || ||
Sbjct 760223 GTGACCA 760217
>seq23
Length=2828041
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 2656966 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 2656907
Query 136777 GGGAACA 136783
| || ||
Sbjct 2656906 GTGACCA 2656900
>seq3
Length=1841604
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 81141 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 81082
Query 136777 GGGAACA 136783
| || ||
Sbjct 81081 GTGACCA 81075
Score = 86.0 bits (94), Expect = 7e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 405324 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 405383
Query 136777 GGGAACA 136783
| || ||
Sbjct 405384 GTGACCA 405390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975801220600
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