Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq21 275 7e-69 >seq21 Length=3333843 Score = 275 bits (304), Expect = 7e-69 Identities = 1119/1740 (64%), Gaps = 35/1740 (2%) Strand=Plus/Plus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATA-TGCATAGAAGA 105648 |||||||||||||| || ||||| || || ||||| || || | |||||||||| Sbjct 606575 CGGAGATAGTACATGCCAGTCTTCAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 606633 Query 105649 GAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAA 105708 || |||| ||| || || | |||| | || | ||| |||||||||||| Sbjct 606634 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGACTGGTCAATGAA 606693 Query 105709 GCGACCACGTTGTGCCGCCATATCAATGACATCCTTCAT--CTTGATTTCCCACACTGTG 105766 |||||| | || ||||| ||||||| |||||| | ||| ||||| || || Sbjct 606694 AGCACCACGGTCAGCGGCCATCTCAATGA--TCCTTCGCTGCGAGATCTCCCAGACGGTC 606751 Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTG--AATTGAACCCCCCG 105824 ||| ||| |||| | || || ||||| | || || || || ||| ||||| || Sbjct 606752 TTGTAAAGAGTCTTTGTCTCCTCAGGGATGT-TGGGA-ATCCTGGCAATAGAACCTCCAT 606809 Query 105825 CCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGA 105884 | || || | | |||||| | || ||||| ||||| || | || || |||| Sbjct 606810 CGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTGA 606869 Query 105885 CGAG--ATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTT 105942 | ||| |||||||| | ||||| || |||||| | | ||||||||| Sbjct 606870 GCAACCATGG--GTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTT 606927 Query 105943 CGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 106002 | ||||| || || ||||| || || || |||| || |||| |||||||| ||||| Sbjct 606928 GGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGG 606987 Query 106003 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAAC 106062 ||| ||||| || | || ||| || | ||| | || || ||||| ||| Sbjct 606988 CATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGA 607047 Query 106063 ATCCCAGTCGTAGTTG--AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCT 106120 ||||||| || | || | ||| | || |||| ||||||| | || || | || Sbjct 607048 CGCCCAGTCCCAGAGGTCAG-TAGGTGTGACATTCC-ACATATCGTACTGGAGGATACCC 607105 Query 106121 TGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 106180 ||||| |||||| || || | |||| || | || | | | || | || || Sbjct 607106 TGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGGCCAAGTTCCTTTGCGATGTCGCAT 607165 Query 106181 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 106240 | || | || || || ||||| || ||||| | || | || ||| ||| Sbjct 607166 GAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCT 607225 Query 106241 TCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 106300 || ||||| || || | |||| | || |||| || ||||||||||||||| Sbjct 607226 TCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCC 607285 Query 106301 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 106360 | ||| || |||| ||| || | || || || || || || || || Sbjct 607286 ATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTG 607345 Query 106361 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 106420 || |||| ||| | || ||| || | || ||||| ||| || || || | Sbjct 607346 ACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTG 607405 Query 106421 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 106480 | ||||| || | || | | |||| | || ||||| | || ||||| ||| Sbjct 607406 AAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTG 607465 Query 106481 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTC 106540 |||||||| |||||| | | |||||||| | ||| || || |||| |||||| || Sbjct 607466 CAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTG 607525 Query 106541 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATG 106600 || || || | ||||| ||||| ||||| |||||| || |||||||||||||| Sbjct 607526 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATA 607585 Query 106601 TAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCGGCTGGT 106660 |||| | || ||||| ||||||| || || || || | ||| | | || | Sbjct 607586 AAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGCGA 607645 Query 106661 ACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 106719 ||| | || | ||| | || | ||||| | ||| || ||||| || || || Sbjct 607646 ACAGTCTCG-CGACCCTTGTTCTGCTTTTCGTAGCTCTCGTACAGAGCTTCGAATTCTTC 607704 Query 106720 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 106779 ||| | |||| ||| || || || || || || | || | ||| | || Sbjct 607705 ACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTT 607764 Query 106780 CTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 106839 || | || ||||||||||| ||||| ||||||||||| | | |||||||| | | Sbjct 607765 GTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGC 607824 Query 106840 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 106899 || |||| || | || ||||| || | |||||||| | | || || ||||| Sbjct 607825 GCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAAGACGTCAGCGTG 607884 Query 106900 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 106953 ||||||||| || |||| |||| | || | ||||| ||| | || | || Sbjct 607885 CCATGGCTCTAGGTAGATGGCGAAGGCACC---TGGACGCTTGTTGCCACCCTGGTCGAC 607941 Query 106954 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 107013 |||||| || ||| ||| |||| || ||||| ||||| | ||| | ||| || || Sbjct 607942 ATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTT 608001 Query 107014 TGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 107071 || || |||| || ||| | | || | | || | || | |||||||| Sbjct 608002 AGTGCCACCGATGTATGAG--CCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCG 608059 Query 107072 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 107131 ||||| ||| ||||| |||||| | | || || | || || |||| ||| | Sbjct 608060 CCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATACTG 608119 Query 107132 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 107191 |||||||| || |||| |||||||| ||||| |||||| |||||| || || ||| Sbjct 608120 TCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCCCGCGTTG 608179 Query 107192 AAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAA 107250 || | || || | ||||| |||| ||| ||| ||||| | |||||| ||||| | Sbjct 608180 AACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGAT 608238 Query 107251 GACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 | | || ||||| || ||||| ||||| | || |||||||| | ||||| ||| || Sbjct 608239 GGCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 608298 Score = 107 bits (118), Expect = 2e-18 Identities = 299/454 (66%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || |||||||| |||||||||||||| ||| | || |||||| ||||| Sbjct 2203347 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTCCATG 2203406 Query 117046 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGCACC---CCAACTTGTTTGAG 117098 ||||| || || || | |||| | | || || || ||||| || Sbjct 2203407 AAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC-------AG 2203459 Query 117099 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 117158 ||||| || | || |||| ||||| | | |||| || |||||| |||| || Sbjct 2203460 CAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGCAG 2203519 Query 117159 ATTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 117218 | ||||| |||||||| | |||| | | ||||||||| || || || | | ||| Sbjct 2203520 AGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGAT 2203579 Query 117219 GGCGTGGATAGTTTCGGTAGTGGGTCTATTA-CGCAAAGTCTTGAAGAGCTCCACGGCAA 117277 || || || || | |||| | || || || |||||| ||| | Sbjct 2203580 AGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGA-GAAGAGAAGGCAGGCGA 2203638 Query 117278 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCA 117337 | || ||| | ||||| || ||||| || || || || ||||| ||| || |||| Sbjct 2203639 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCA 2203698 Query 117338 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 | ||||| |||||||| | ||| | || | | ||| || ||| |||||||||||||| Sbjct 2203699 TCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCT 2203758 Query 117398 CCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 | ||| || || |||| ||||| | |||||| Sbjct 2203759 CAACAGCGGCGAATGCAACGAGGCGGTTGGCGAA 2203792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980600881480