Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq23 95.1 8e-15 seq12 84.2 1e-11 >seq23 Length=2828041 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| ||||| || || |||| | || ||| Sbjct 925931 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCC 925872 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || |||||||| | || | ||||||||||| Sbjct 925871 AGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGG 925812 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || || | |||| || | | ||| || || | || ||||| ||| Sbjct 925811 ATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTT 925752 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || |||||||| ||||||||||||||| Sbjct 925751 CCGGTAAGAGTCTTGACAAAGATCTGCATA 925722 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| |||| || || || ||||| ||||| || || | || | || ||| Sbjct 925703 ACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCC 925644 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| |||||||| || || || || || ||||| | || | ||||||||||| Sbjct 925643 AACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGG 925584 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | || | | || || |||| || ||||| || Sbjct 925583 ATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTG 925524 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || ||||| || ||||| |||||| Sbjct 925523 CCAGTCAGGGTCTTGACGAAGATTTGCATA 925494 Score = 82.4 bits (90), Expect = 5e-11 Identities = 124/174 (71%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || ||| | || |||| || ||||| || ||||| || Sbjct 925177 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAA 925118 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || | || ||||||||| | || | ||||||||||| ||||| ||||| | Sbjct 925117 GATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGAC--A 925060 Query 34910 TGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959 | | ||||| ||| | |||||| |||| ||| ||||| ||||| |||| Sbjct 925059 T--TGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGTGA 925008 >seq12 Length=3815900 Score = 84.2 bits (92), Expect = 1e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||||||||| | || |||| || Sbjct 2951403 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCG 2951462 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||| |||||||| || || || || |||||||| | || | ||||||||||| Sbjct 2951463 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 2951518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633493175256