Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq23 100 2e-15 seq1 86.0 5e-11 >seq23 Length=2828041 Score = 100 bits (110), Expect = 2e-15 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-AGTGCT--T 550376 |||| || | || ||||||||||| || | || |||| |||| ||| ||| || Sbjct 526535 CACCCGAGGAGATCTCATCTATGGTCTTGACCAAGATGAGGGAAACTGCCGAGTCCTACC 526476 Query 550377 TTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCAC 550436 | | ||| || |||| | || || | ||||| || ||||| || || ||||| | Sbjct 526475 TCGGTGG-CA--CCGTTAACAACGCTGTCGTCACTGTTCCCGCATACTTCAACGACTCGC 526419 Query 550437 AACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCA 550496 ||||||| ||||| || |||||||| | ||||| || || || || || ||||| |||| Sbjct 526418 AACGTCAGGCTACCAAGGATGCTGGTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCA 526359 Query 550497 ATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 | || |||||||| ||||| | || || || ||||| || Sbjct 526358 ACGAGCCTACTGCCGCTGCCATCGCCTACGGTCTTGACAA 526319 >seq1 Length=3968015 Score = 86.0 bits (94), Expect = 5e-11 Identities = 114/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Plus Query 550381 TGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 ||| |||||| || | | | || || | || || || || || || || ||||| || | Sbjct 685966 TGGGCAAGAACGTCAAGAACGCCGTCGTCACCGTCCCCGCCTACTTCAACGACTCCCAGC 686025 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 |||||||||| || || ||||| | || ||||| || || ||||| ||| | |||| | Sbjct 686026 GTCAAGCTACCAAGGACGCTGGTCAAATCGCTGGTCTCAACGTTCTCCGTGTCGTCAACG 686085 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||| || ||||| || || || || || ||||| || Sbjct 686086 AACCCACCGCTGCCGCTCTCGCCTACGGTCTTGACAA 686122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294572118230