Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 1e-13
>seq1
Length=3968015
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 29751 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTC 29810
||| ||| | ||||| || || || || || | ||| ||||| |||||||| ||
Sbjct 260225 GTTGATCTTGAGTGTAGGGAACTCTCGCGGTTCGCGCTCCAGCTGCACCTTCAGCGCATC 260284
Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870
| ||| || | ||| ||||| ||||| |||| || || ||| || || |||
Sbjct 260285 TATGTGGTCGATGTATACGTGTGCGTCGCCCATTGTATGTGTAAATGTACCGGGCGTTAG 260344
Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930
|| || ||||| | ||||| ||||| || | |||| ||||||||| || |||||
Sbjct 260345 GTCGCACACATGAGCTAGCATGTGAGTGAGAAGCGCGTAGGAGGCGATGTTGAAAGGTAC 260404
Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG 29963
||||| ||||| || | || |||||||||||
Sbjct 260405 ACCGAGACCCATATCGCAGGATCTCTGGTAGAG 260437
Score = 87.8 bits (96), Expect = 1e-12
Identities = 161/235 (69%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 30150 CATGTCCGT-GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208
||||||| | |||||| || || ||||||| ||||||||| ||||| || || ||||| |
Sbjct 260656 CATGTCCCTTGTACTCCGCGCCAAAATGCCGCCACTGGAAACCGTATACTGGACCCAGCT 260715
Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
| || || || ||| | | |||| |||||| | | || | |||||| |||
Sbjct 260716 CGCCTTCCTCGTAGTGGTTTAGGCCCACCTTGTCGAGGTACTCCCGACTGCCGTTGCCGT 260775
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328
|||||||||| | || || ||||| ||| || |||| ||| ||| ||||
Sbjct 260776 CCCAGATCTTGATACCAGCGTCCGAGAGAGACTTGCTGTGTGTGCTGCCTGCGACAAACC 260835
Query 30329 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383
| |||| ||| | | ||||| ||| || || || || |||||||||||
Sbjct 260836 ATAGCAACTCGCCAATTACGGCACGAGTAAATACTCTTTTTGTTGTGAGGAGGGG 260890
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408617465539271
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |