Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 >seq1 Length=3968015 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 29751 GTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTC 29810 ||| ||| | ||||| || || || || || | ||| ||||| |||||||| || Sbjct 260225 GTTGATCTTGAGTGTAGGGAACTCTCGCGGTTCGCGCTCCAGCTGCACCTTCAGCGCATC 260284 Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 | ||| || | ||| ||||| ||||| |||| || || ||| || || ||| Sbjct 260285 TATGTGGTCGATGTATACGTGTGCGTCGCCCATTGTATGTGTAAATGTACCGGGCGTTAG 260344 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 || || ||||| | ||||| ||||| || | |||| ||||||||| || ||||| Sbjct 260345 GTCGCACACATGAGCTAGCATGTGAGTGAGAAGCGCGTAGGAGGCGATGTTGAAAGGTAC 260404 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAG 29963 ||||| ||||| || | || ||||||||||| Sbjct 260405 ACCGAGACCCATATCGCAGGATCTCTGGTAGAG 260437 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 30150 CATGTCCGT-GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 ||||||| | |||||| || || ||||||| ||||||||| ||||| || || ||||| | Sbjct 260656 CATGTCCCTTGTACTCCGCGCCAAAATGCCGCCACTGGAAACCGTATACTGGACCCAGCT 260715 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || || || ||| | | |||| |||||| | | || | |||||| ||| Sbjct 260716 CGCCTTCCTCGTAGTGGTTTAGGCCCACCTTGTCGAGGTACTCCCGACTGCCGTTGCCGT 260775 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||||||||| | || || ||||| ||| || |||| ||| ||| |||| Sbjct 260776 CCCAGATCTTGATACCAGCGTCCGAGAGAGACTTGCTGTGTGTGCTGCCTGCGACAAACC 260835 Query 30329 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | |||| ||| | | ||||| ||| || || || || ||||||||||| Sbjct 260836 ATAGCAACTCGCCAATTACGGCACGAGTAAATACTCTTTTTGTTGTGAGGAGGGG 260890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617465539271