Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq23 95.1 9e-15
seq12 84.2 2e-11
>seq23
Length=2828041
Score = 95.1 bits (104), Expect = 9e-15
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || || ||| ||| ||||| || ||||| || || ||| | ||
Sbjct 925712 AGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGG 925653
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| ||||||||||| ||||| || || || |||||||| |||| |||| ||||||
Sbjct 925652 CCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCC 925593
Query 48669 TTGTC 48673
|||||
Sbjct 925592 TTGTC 925588
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
||||| | || || | |||||| || || || ||| || || || ||||| || ||
Sbjct 925949 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 925890
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
|| |||| |||| |||| ||||||||| || || || || ||||| || || | ||
Sbjct 925889 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGG 925830
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||||||||| ||||| |||||| | | | || | ||| ||
Sbjct 925829 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACT 925770
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| || ||||| || | ||| || ||||| ||||||||
Sbjct 925769 TCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 925723
>seq12
Length=3815900
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| ||| || || || ||||| || || ||| | || | || ||
Sbjct 2951403 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCCTCG 2951462
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
| |||||| ||||| || ||||| ||||| || |||| ||||| ||||||||||||
Sbjct 2951463 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 2951518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937474647721
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |