Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq21 286 6e-72 >seq21 Length=3333843 Score = 286 bits (316), Expect = 6e-72 Identities = 1042/1610 (65%), Gaps = 72/1610 (4%) Strand=Plus/Plus Query 212577 GCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCC--CCAGCCGTGCA 212634 |||||| |||| || |||||||||||||| ||||| || || ||| |||||| | Sbjct 606563 GCAGCCATGGTACGGAGATAGTACATGCCAGTCTTCAGACCA--GCCTTCCAGCCAGCAA 606620 Query 212635 TGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTA 212694 |||||| | |||| |||| | || || || | || || || | Sbjct 606621 AGTGCATAGAAGTGA---TCTTGCCCATAGTAGGCTCCT-----TCATG-------TGGA 606665 Query 212695 GGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATAT 212754 ||| || |||||| |||||| ||||| | | | |||||||||||| || ||||| Sbjct 606666 TGTTTAGCGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTCAATGATCC 606725 Query 212755 CTCTCTGGGAGAGCTCCCACACGGTCTTG--AAGATTTCTTTGAGGTCCTCTGGGAAGCC 212812 || ||| |||| |||||| ||||||||| |||| | ||||| ||||| |||| | Sbjct 606726 TTCGCTGCGAGATCTCCCAGACGGTCTTGTAAAGAGT-CTTTGTC-TCCTCAGGGATGTT 606783 Query 212813 GGGGATGTTCTGCACAGACCCCCTGTGT---ATGGTCAGCTGCAGGCGCATGTCCTCGTT 212869 ||| || | | ||| || | | ||| | | | | ||||| ||| Sbjct 606784 GGGAATCCTGGCAATAGAACCTCCATCGGCGATGATACGGTTCTT---CATGTTCTCAGA 606840 Query 212870 CCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACC 212929 ||| || ||| || | ||| ||||| || |||||||| | |||||| ||||| Sbjct 606841 CCACAGACCCATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACC 606900 Query 212930 TGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCC 212989 | ||| || | | || | ||| || ||||| ||||||| || ||||||||| || Sbjct 606901 AGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCC 606960 Query 212990 CAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCC 213049 ||||||||||| |||| ||| || |||||||| || | || || ||| | || || Sbjct 606961 CAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACC 607020 Query 213050 GTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109 |||||| | || | || ||||||||||| | ||| |||| Sbjct 607021 GTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGT-AGGTG------ 607073 Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGA 213169 | || |||||||| || |||| | ||| || | | ||||| || | ||| | Sbjct 607074 --TGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGT 607131 Query 213170 GGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGAT 213229 ||| |||||| | ||||| || | ||||| || | || ||||| | |||||| Sbjct 607132 CTTGTAAGGGCCAAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGAT 607191 Query 213230 GGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCA- 213288 ||| || || || | ||||||||||||| || || ||| ||| || | | Sbjct 607192 GGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAAGGCGGAG 607251 Query 213289 TGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGT 213348 |||| |||| |||| || || || || || || || |||||||||| ||| | | || Sbjct 607252 TGCGA-GGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGT 607310 Query 213349 TAGACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTG 213407 | | | || ||| || | ||||| |||| |||||||||||||| | |||| Sbjct 607311 TGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTG 607369 Query 213408 CGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCC 213467 |||||| | || | ||||| | | || | || | | |||||| | || || Sbjct 607370 CGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAG 607429 Query 213468 TGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCT 213527 | ||||| ||||||||| | |||| ||||||||| || ||||| | || | Sbjct 607430 TCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCG 607489 Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| ||||| |||||||||||| || |||||||| || ||||||| ||| Sbjct 607490 GTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGG 607549 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || |||||||||||||| ||||| || ||||| ||| Sbjct 607550 TTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGT 607609 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCTGAC---AGCTCCG 213704 | | | || || | ||| || | || | || || | | ||| | || | Sbjct 607610 GCCTCAAGGATGGCGTACCAAAGCT-TTTGTGCGCGAACAGTCTCGCGACCCTTGTTCTG 607668 Query 213705 ---GGCGTAGC-CTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTC 213760 |||||| ||||||| |||||| | |||||| | || |||| | | Sbjct 607669 CTTTTCGTAGCTCTCGTAC-------AGAGCT--TCGAATTCTTCACCGTAGACATCGGC 607719 Query 213761 CAGTCCCGGACA-GGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCT 213819 || || || || | |||| ||||| || |||||| |||| ||| ||| | || Sbjct 607720 GAGGCCAGGGCACTCGTTCGGG-CACATCAGTGTCCAGTTGCCGTTGTCTTGGACACGCT 607778 Query 213820 GCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCA 213879 |||||| ||||| || | |||||| ||| ||| || || | | | ||| ||| Sbjct 607779 TCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCT 607838 Query 213880 CTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGT 213939 || ||| |||||||| || || || |||||| ||| |||||||| ||||| | || Sbjct 607839 TGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGT 607898 Query 213940 AGATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCA--- 213993 ||||||| ||||| || | || | ||||| |||||||| | | | || | || Sbjct 607899 AGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGA----CATAGCGAGCAGTG 607954 Query 213994 -TGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATA 214052 ||||| | | || || | ||| | || ||||| || |||||| || || | || Sbjct 607955 TTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATG 608014 Query 214053 TACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAG 214112 || ||||| | || | | | | || | ||| || || || || ||| ||||||| Sbjct 608015 TATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAG 608074 Query 214113 ATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 |||| || ||| | | | || || |||||| | || ||||| || Sbjct 608075 ATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATACTGTCCTC 608124 Score = 275 bits (304), Expect = 1e-68 Identities = 578/851 (68%), Gaps = 28/851 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 ||||||||| || || | ||||| |||||||| ||||| || ||| || |||||||| Sbjct 2203343 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 2203402 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACC----CGTGTC--AGGCCCATCTGTTC 47952 ||||||| ||||||||||| | || || ||| ||| | ||| ||| | Sbjct 2203403 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC----- 2203457 Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| | || |||||| |||||||||||| ||||||| || ||||||||| | Sbjct 2203458 -AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAG 2203516 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 || | || | || | | | ||||||| ||| |||| |||||||| | Sbjct 2203517 CAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGAT 2203576 Query 48073 AATCTGCT-TAACGCGGGACTCTGAG---GGTTTGTTGCGCAGGTGCTTGGCATAGAGCA 48128 || ||| | || ||||||| | || ||||| ||| | | |||| | Sbjct 2203577 GATA-GCTCTGACA---GACTCTGGGCTGGGCTTGTTCTCGAGGAGAGAGA---AGAGAA 2203629 Query 48129 TGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGA 48188 |||||| ||||| |||||| ||| ||||| ||| ||||||| |||||||||| | Sbjct 2203630 GGCAGGCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTA 2203689 Query 48189 GACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGA 48248 |||| ||||| | || | || ||||||||||| || | |||||||| || ||||| Sbjct 2203690 GACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGA 2203749 Query 48249 AGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG 48308 |||| ||||| || || ||||| || ||| | | |||| | | ||||||||| | Sbjct 2203750 AGATACCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGG 2203809 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 ||||||| || |||||||| |||||||| |||||| || || | || ||||| Sbjct 2203810 AGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGT 2203869 Query 48369 GGAAGAGCTTCTTGCACTCACCTGCGTCCGC-AACATAGGTAGTGAGCAGCTTTGCGTAC 48427 |||||| | | ||| || | || | ||| || || || || ||| | ||| Sbjct 2203870 TGAAGAGGTACCTGCGCT-GCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAG 2203928 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 |||| ||||| || ||||| || ||| ||||| ||||||||| | ||||| Sbjct 2203929 GTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGG 2203988 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCA 48547 | || ||||| | ||||||| ||| | || ||||| ||||| || ||||| || || Sbjct 2203989 ATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCT 2204048 Query 48548 GCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA-GC--ATTC 48604 || |||||||| ||||| || | ||| |||||||| | | ||||| || ||| Sbjct 2204049 GCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGACGCTTGTTC 2204108 Query 48605 CAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCT 48664 ||| | || | ||| ||| ||||| | || || | |||||||| || || || Sbjct 2204109 CAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCC 2204168 Query 48665 TTTTTGTACAT 48675 || |||||||| Sbjct 2204169 TTCTTGTACAT 2204179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532485607680