Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq21 269 5e-67 >seq21 Length=3333843 Score = 269 bits (298), Expect = 5e-67 Identities = 739/1119 (66%), Gaps = 35/1119 (3%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || || ||||| |||||||||||||| ||||| ||||||| |||| || ||| Sbjct 607172 GTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCT 607231 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || ||| || | || || | ||| | ||||| || || || || || |||||| Sbjct 607232 GACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCG 607291 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTC 221595 ||||| | ||| | |||| ||||| || ||| || || || |||||| || Sbjct 607292 ATGGGTCGGTGGCGGAAGTTGCT-GCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTC 607350 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | ||||| | ||| | |||| ||| | || ||| ||||||| | Sbjct 607351 GATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCT------T 607404 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 ||| | ||| ||||| | | || | || ||||||| ||||||| || Sbjct 607405 GAAGTCAAACACGCCGGCCTTGTAG------TCGACAAAAGAAGGCAGGGCAAGAGAAGC 607458 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 || ||| || || || ||||| || ||| |||| | ||||| || || ||||| Sbjct 607459 CAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTT 607518 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 | || |||||| || |||| || || || |||||| ||| |||||||||||| Sbjct 607519 GGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTA 607578 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 |||||||||||| |||||||| ||| ||| | || || || ||| || | | Sbjct 607579 GAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTG 607638 Query 221896 GGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCT---TTTCATACCCG--GTATAGAGC 221950 |||| || ||| || ||| ||| | ||| |||| || | ||| ||||| Sbjct 607639 TGCGCGAACAGTC-TCGCGAC-----CCTTGTTCTGCTTTTCGTAGCTCTCGTACAGAGC 607692 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | | || | ||||||||| | ||| | ||||| || ||| | || |||||||| Sbjct 607693 TT--CGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGT 607750 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 |||||| |||||||| ||| | || |||||||||||| || |||||||| || | Sbjct 607751 GTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAG 607810 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 |||||||| | | || ||||||| ||||| ||| || | ||| || | || || Sbjct 607811 AAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCA 607870 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || | |||||||||||| ||||| || |||| ||| | || || || |||||||||||| Sbjct 607871 AAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCA 607930 Query 222191 CCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 ||||| || | ||| ||| | |||| | | || || | || | || ||||| Sbjct 607931 CCCTGGTCGA-CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTT 607989 Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA--GGTTACTGGCAGAC 222307 ||| ||||| ||||| ||||| | || || | | | | | | | Sbjct 607990 AGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTG-- 608047 Query 222308 ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 | ||| ||||| || ||| || ||||||| || ||| ||||||| ||||| ||| Sbjct 608048 AGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATG 608107 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT-TTGGT 222426 || || ||| ||||||||| | || | || || || |||||||| || | | |||| Sbjct 608108 CCGTCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGT 608167 Query 222427 GGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATC 222486 | | ||||| |||| ||| || ||||||||| ||||| |||||| || Sbjct 608168 -GTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTC 608226 Query 222487 GTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525 ||| ||||| | | || | |||||| || |||||||| Sbjct 608227 GTAGGTCTCGATGGCTTTCTCGATGTCATCACCGTGAAT 608265 Score = 242 bits (268), Expect = 7e-59 Identities = 569/855 (67%), Gaps = 26/855 (3%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| |||||||||||||||| | || ||||||||| || ||||| || || || Sbjct 2204185 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 2204126 Query 25540 AAGGACATGGACGGCTGGTAC--GC-TCTATCCAAAGACGAGCAGCATTTTC-TCAAGTA 25595 |||||| | ||| |||| || || ||| | | ||||||| || | ||| || | Sbjct 2204125 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGC-GCTTCTTCATCTCCCA 2204067 Query 25596 CGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATT 25655 ||| | || ||||| |||||||| ||||| || || |||||||| || ||| |||| Sbjct 2204066 CGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATT 2204007 Query 25656 CACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGA 25715 | | || ||||| || | ||||| || |||||||||||||| || || || Sbjct 2204006 CTCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGA 2203947 Query 25716 AAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGA 25775 || || ||||| ||| || | ||| | || ||||||| || ||| | Sbjct 2203946 GAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGA----GCCCA 2203891 Query 25776 GAGAGATCGG----CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 || | | || || |||||||| |||| ||| ||||| | |||||| Sbjct 2203890 AGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCG 2203831 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 |||||| || |||||| | | ||| | | || || | | | || || || || | Sbjct 2203830 ACTGGGCCCTGCGATGGATCTCCGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCAT 2203771 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 | || ||||| ||||| ||||| ||||||||||| || || ||||||||||||||||| Sbjct 2203770 TCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGA 2203711 Query 25952 AGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 || || |||||||| || || ||||||||||||||| | | |||||||| Sbjct 2203710 AGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCA 2203651 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAG 26071 | |||| || || |||||||| |||| | | || | | |||| || | || Sbjct 2203650 TGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAG---AACAAGCCCAGCCCAG 2203594 Query 26072 AGACCGTCTACAG-TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNN 26130 || | ||| | || |||||||| || || || ||||| ||| ||||||| Sbjct 2203593 AGTCTGTC-AGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGAC 2203535 Query 26131 NNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTAT 26190 | ||||||||| | |||||| |||||||||| |||| Sbjct 2203534 GCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTC 2203475 Query 26191 GTGGCCGACCATCTGCTGT--GCCAGCTGGGACTCGCCAGACTCTACAGTACGC--CTAA 26246 || || |||| |||||||| ||| || || || || ||||| |||| | || Sbjct 2203474 GTCGCTGACCGTCTGCTGTTGGCC--CTCGGCAACGTCAAGGTCTAC--CACGCCACCAA 2203419 Query 26247 CCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAG 26306 ||| |||||||| ||||| ||||| || ||| || |||||||||||||| || ||| | Sbjct 2203418 CCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCG 2203359 Query 26307 GGTCGGCGACTATCA 26321 ||||||||||| || Sbjct 2203358 CGTCGGCGACTACCA 2203344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844486514880