Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq21 282 5e-71 >seq21 Length=3333843 Score = 282 bits (312), Expect = 5e-71 Identities = 1120/1740 (64%), Gaps = 33/1740 (2%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 |||||| ||||| ||||||| || || | ||||| ||||| || ||||| || | Sbjct 608299 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATCGAGAAAGC 608240 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 75329 | | ||||| |||||| | ||||| ||| ||| |||| ||||| | || || | | Sbjct 608239 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 608181 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || || |||||| |||||| ||||| |||||||| |||| || ||||||| Sbjct 608180 TCAACGCGGGCACACCATCACCGCAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 608121 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 || ||| |||| || || | || || | | |||||| ||||| ||| |||| Sbjct 608120 ACAGTATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 608061 Query 75450 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 75507 | |||||||| | || | || | | || | | ||| || |||| || || Sbjct 608060 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGG--CTCATACATCGGTGGCAC 608003 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 || || ||| | ||| | ||||| ||||| || |||| ||| ||| || ||||| Sbjct 608002 TAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 607943 Query 75568 TGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCATG 75621 ||| | || | || ||||| ||| | || |||| ||||| | || ||||| Sbjct 607942 TGTCGACCAGGGTGGCAACAAGCGTCC--AGGTG-CCTTCGCCATCTACCTAGAGCCATG 607886 Query 75622 GCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCG 75681 ||| || || || | | |||||||| | || ||||| || | || |||| || Sbjct 607885 GCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG 607826 Query 75682 GTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGA 75741 | | |||||||| | | ||||||||||| ||||| ||||||||||| || | || Sbjct 607825 CGCTCGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAAGA 607766 Query 75742 GGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGG 75801 || | ||| | || | || || || || || || ||| |||| | || Sbjct 607765 CAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGG 607706 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 ||| || || ||||| || ||| | || ||| || || | | | |||||| Sbjct 607705 TGAAGAATTCGAAGCTCTGTACGAGAGCTACGAAAAGCAGAACAAGGGTCGCGAGACTGT 607646 Query 75862 ACCAGCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATA 75921 | || | ||||| | || || || | ||||||| |||||||| | || | Sbjct 607645 TCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTT 607586 Query 75922 TATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAA 75981 |||||| |||||||| ||||| ||| ||||| ||||| ||||| | || || ||| Sbjct 607585 TATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCG 607526 Query 75982 GAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTG 76041 ||||| || || ||||| || ||| | |||||||| | | |||||| |||||||| Sbjct 607525 CAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTG 607466 Query 76042 CAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTA 76101 ||| ||||| || | ||||| || | |||| | | || | || ||||| | Sbjct 607465 CAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACAAGGCCGGCGTGTTTGACTT 607406 Query 76102 TGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAG 76161 | || || || ||| ||||| || | || ||| || | ||| |||| || Sbjct 607405 CAAGAAGCTCCACGAAGTCACACAGGTCGTCACCCGCAACTTGAACAAGATCATCGAGGT 607346 Query 76162 AAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTT 76221 || || || || || || || || | || ||| |||| || ||| | Sbjct 607345 CAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATCGGTAT 607286 Query 76222 GGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGA 76281 ||||||||||||||| || |||| || | |||| | || || ||||| || Sbjct 607285 GGGTGTTCAAGGTCTTGCCGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCAGACGA 607226 Query 76282 AGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAG 76341 ||| ||| || | || | ||||| || ||||| || || || | || | Sbjct 607225 AGCTAAGAAGCTCAACATCCAAATCTTCGAGACCATCTACCATGCTGCTCTCACTTCCTC 607166 Query 76342 TTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCA 76401 || || | || | | | || | || |||| | || || ||||||| ||||| Sbjct 607165 ATGCGACATCGCAAAGGAACTTGGCCCTTACAAGACCTACGAAGGATCTCCCGTATCCCA 607106 Query 76402 AGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT--CAACTACGACTGGGAT 76459 || | || |||| ||||||| |||| || | ||| | || | || ||||||| Sbjct 607105 GGGTATCCTCCAGTACGATATGT-GGAATGTCACACCTA-CTGACCTCTGGGACTGGGCG 607048 Query 76460 GTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATG 76519 ||| ||||| || ||| | ||| | || ||| || | || ||||| ||| Sbjct 607047 TCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGCAACTCGCTGCTCATTGCACCCATG 606988 Query 76520 CCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACA 76579 ||||| |||||||| |||| || |||| || || || ||||| || |||||||| | Sbjct 606987 CCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACACCTCC 606928 Query 76580 AACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTC 76639 |||||||| | | |||||| |||||||| |||||||| | || Sbjct 606927 AACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAACCCATGGTTGCTC 606868 Query 76640 AATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCG 76699 || ||||| | || ||||| ||||| || | |||||| | | || | | Sbjct 606867 AAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCATCGCCGAT 606808 Query 76700 GGTGGTTCCATT--CAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCA 76757 || ||||| ||| || || || || | ||||| || || | |||| ||| ||| | Sbjct 606807 GGAGGTTCTATTGCCAGGAT-TCCCA-ACATCCCTGAGGAGACAAAGACTCTTTACAAGA 606750 Query 76758 CAGTGTGGGAAATCAAG--ATGAAAGATGTCATTGACATGGCCGCAGATCGTGGTCGCTT 76815 | || ||||| ||| | ||| || ||||||| |||||||| || |||||| || Sbjct 606749 CCGTCTGGGAGATCTCGCAGCGAAGGA--TCATTGAGATGGCCGCTGACCGTGGTGCTTT 606692 Query 76816 CATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCCAAGCTC 76873 |||||| | |||| ||| | || | |||| | || || ||| |||| || Sbjct 606691 CATTGACC--AGTCTCAGTCGCTAAACATCCACATGAAGGAGCCTACTATGGGCAAGATC 606634 Query 76874 TCTTCTATGCA-TATGTACGCGTGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCG 76932 |||||||||| | || || ||||| || || || || || |||||||||||||| Sbjct 606633 ACTTCTATGCACTTTGCTGGC-TGGAAGGCTGGTCTGAAGACTGGCATGTACTATCTCCG 606575 Score = 107 bits (118), Expect = 2e-18 Identities = 299/454 (66%), Gaps = 16/454 (4%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 |||||| | ||||| |||| || || ||| ||||||||||||||| ||| || ||| Sbjct 2203792 TTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTC 2203733 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 | | || | ||| | |||||||| ||||| ||||| || ||| ||||| || || Sbjct 2203732 GCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAG 2203673 Query 65191 CTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTG 65250 || || ||||| || ||||| | ||| || || ||| |||||| || Sbjct 2203672 CTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTC-TCTCTCCT 2203614 Query 65251 CG-TAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGA 65309 || || | |||| | || || || || ||| | | || || || |||||||| Sbjct 2203613 CGAGAACAAGCCCAGCCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGA 2203554 Query 65310 GAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGAT 65369 | | | |||| | |||||||| ||||| ||| |||| |||||| || || Sbjct 2203553 GCAGGAGTTCTTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCAT 2203494 Query 65370 GTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGG---GGTGCCAC- 65425 || | | ||||| |||| || | || ||||| || ||||| || || Sbjct 2203493 GTGCCAATACATCGAGTTCGTCGCTGACCGTCTGCT-------GTTGGCCCTCGGCAACG 2203441 Query 65426 CCA---TTTGGAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGA 65482 || | | |||| | || || || ||||| ||||| |||||| || | ||| | Sbjct 2203440 TCAAGGTCTACCACGCCACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTA 2203381 Query 65483 AGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||||| |||||||| || || ||||| Sbjct 2203380 AGACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 2203347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569398657760