Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq22 131 5e-25 seq2 86.0 2e-11 >seq22 Length=2852027 Score = 131 bits (144), Expect = 5e-25 Identities = 388/588 (66%), Gaps = 24/588 (4%) Strand=Plus/Minus Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471 ||| || ||| |||||| || || |||| ||||| || || | | || || |||| Sbjct 2620968 ACCGCAGATATCACACACGTGCACCGTGTACGCATCCGAAACGGTAAAGAGACGTTCCTT 2620909 Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531 ||| | |||||||| | ||||||||||||||| ||||| || |||||||| || Sbjct 2620908 CAAAAAGGCGGCGGCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAG 2620849 Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC--- 251588 |||||| || | ||| | ||||||| ||||||| ||||| ||| | || ||||| Sbjct 2620848 ACCACCGTCCCTAGCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAGCGGACCACG 2620789 Query 251589 -GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGG 251647 | ||||| || ||| || | ||||||||| | ||||| |||||| ||| | Sbjct 2620788 AGCACGAGCG----TGAATCTTGTCGTCGACCATATGCCTTAGACGTTGGTAGTATGTAG 2620733 Query 251648 GACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGT 251707 | || | |||||| | |||| | || ||| || || | || ||||| | ||| Sbjct 2620732 GTCCCAAGAAGATTTGTGTTCGCATCTTCTTTCCCGTGTGACCATTGTACATGATCTCGA 2620673 Query 251708 TTCCATTAGATTCATAACCAAGTTTCTGTAGC--TCTGAAGCAATATCACCAATCTTGAA 251765 ||| || || || | || ||| | | | || | | | | ||| Sbjct 2620672 AACCACGCTTTTGGTAGCCGGCATCCTCGAGCAGACCGGA-CACT-TGGTCGACGGTGAT 2620615 Query 251766 TTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAAT--CAAC-ACTTTGCCTAA 251822 | | | ||| ||| |||| || | | ||| | ||| || | || ||| | Sbjct 2620614 GTCGGTGAAAGGTGTGGCGTCACCCTCTTGTCCCGT---AATGGCACCGACCTTGGAGAG 2620558 Query 251823 AAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGAT 251882 || ||| ||| ||||| || ||||||||| ||||| || ||||| |||||||| Sbjct 2620557 CAGACACTCGATCAAATGGGCAATTGTCATACGAGACGGAATGGCGTGGGGGTTGATGAT 2620498 Query 251883 GATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTT 251939 | || ||| | ||||| || | ||| |||||||| ||||| | || || | Sbjct 2620497 CAGATCCGGTGTGAGTCCCTCCCTGGAGAATGGCATATC---TTCCTGGCGGTAGGTGAT 2620441 Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||| ||||||||||| |||||||||||| |||||||||||||| Sbjct 2620440 ACCAATGGTTCCCTTTTGACCGTGACGAGAAGCAAACTTATCACCAAT 2620393 Score = 111 bits (122), Expect = 5e-19 Identities = 172/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||| ||||| | ||||| | |||||| || || |||||||| | ||| || Sbjct 1573323 CATAACATCTTCGAGCGCCTTGACGAGACGACGTTGGATGTAACCAGTCTCGGCTGTCTT 1573264 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG- 302683 || ||||||||||| | ||| |||||||| |||| || |||||||| | ||||| Sbjct 1573263 GACTGCTGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGA---ATTCCGA 1573207 Query 302684 -GTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741 | || || || | || ||||| | || ||||||||||| | || ||||| | ||| Sbjct 1573206 AGGGGTGAGACCGCGAAGGTAGGAGTTTTCGACGAAACCACGGGATTCTGGCGAGTAGTC 1573147 Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATC 302801 | ||| | || || ||||| ||||||| || |||| || || ||||||| ||| || Sbjct 1573146 GTCCTTTGAGAAATGCGGCAGTGTCCTGTACTTGAAGCCATAGGGAATACGCTGTCCTTC 1573087 Query 302802 AAC 302804 || Sbjct 1573086 CAC 1573084 Score = 89.7 bits (98), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 8/145 (6%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 |||||||||||||||||||||||||||||||| || || | |||||||||||| || | Sbjct 2620895 GCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAGACCACCGTCCCTA 2620836 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAA----CAGTTCTTGGACCCTGAGCACGATA 233388 | | ||||| ||| | || ||||| | || ||| ||||| |||||||| Sbjct 2620835 GCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAG----CGGACCACGAGCACGAGC 2620780 Query 233389 ATTAATTTTATCTTTAACCATATGC 233413 | ||| || || | ||||||||| Sbjct 2620779 GTGAATCTTGTCGTCGACCATATGC 2620755 >seq2 Length=2381493 Score = 86.0 bits (94), Expect = 2e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 353938 TCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGA 353997 ||||||||||| ||| | |||||| | ||| || || || || ||||| || Sbjct 724765 TCGGGGCAGAGAGCACCAACGAATTCTTCGTTATGCGAAATCATGATGACACCACCCTTG 724824 Query 353998 TAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGT 354057 ||| ||| || |||||| |||| |||||||| ||||| | ||| || || ||| Sbjct 724825 TAGTCACGAATGGCAACAGCGAGACCACCGAGCGAGTCGCGGTCCAAGAAGTTGGTGGGT 724884 Query 354058 TCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACC 354117 ||||| || | || | ||||| | ||||||| || | || || || ||||| ||| Sbjct 724885 TCGTCGAGAACGAGGAGATGCGGGTTGTTCCACATGGCACCGGCAAGCACAACCTTGACC 724944 Query 354118 TTCTGTCCGCCTGATAG 354134 |||||||| || || || Sbjct 724945 TTCTGTCCTCCGGAAAG 724961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817090843099