Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq22 131 5e-25
seq2 86.0 2e-11
>seq22
Length=2852027
Score = 131 bits (144), Expect = 5e-25
Identities = 388/588 (66%), Gaps = 24/588 (4%)
Strand=Plus/Minus
Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471
||| || ||| |||||| || || |||| ||||| || || | | || || ||||
Sbjct 2620968 ACCGCAGATATCACACACGTGCACCGTGTACGCATCCGAAACGGTAAAGAGACGTTCCTT 2620909
Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531
||| | |||||||| | ||||||||||||||| ||||| || |||||||| ||
Sbjct 2620908 CAAAAAGGCGGCGGCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAG 2620849
Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACC--- 251588
|||||| || | ||| | ||||||| ||||||| ||||| ||| | || |||||
Sbjct 2620848 ACCACCGTCCCTAGCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAGCGGACCACG 2620789
Query 251589 -GATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGG 251647
| ||||| || ||| || | ||||||||| | ||||| |||||| ||| |
Sbjct 2620788 AGCACGAGCG----TGAATCTTGTCGTCGACCATATGCCTTAGACGTTGGTAGTATGTAG 2620733
Query 251648 GACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAACTTCGT 251707
| || | |||||| | |||| | || ||| || || | || ||||| | |||
Sbjct 2620732 GTCCCAAGAAGATTTGTGTTCGCATCTTCTTTCCCGTGTGACCATTGTACATGATCTCGA 2620673
Query 251708 TTCCATTAGATTCATAACCAAGTTTCTGTAGC--TCTGAAGCAATATCACCAATCTTGAA 251765
||| || || || | || ||| | | | || | | | | |||
Sbjct 2620672 AACCACGCTTTTGGTAGCCGGCATCCTCGAGCAGACCGGA-CACT-TGGTCGACGGTGAT 2620615
Query 251766 TTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATTTGAAT--CAAC-ACTTTGCCTAA 251822
| | | ||| ||| |||| || | | ||| | ||| || | || ||| |
Sbjct 2620614 GTCGGTGAAAGGTGTGGCGTCACCCTCTTGTCCCGT---AATGGCACCGACCTTGGAGAG 2620558
Query 251823 AAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGAT 251882
|| ||| ||| ||||| || ||||||||| ||||| || ||||| ||||||||
Sbjct 2620557 CAGACACTCGATCAAATGGGCAATTGTCATACGAGACGGAATGGCGTGGGGGTTGATGAT 2620498
Query 251883 GATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATA-ATGTT 251939
| || ||| | ||||| || | ||| |||||||| ||||| | || || |
Sbjct 2620497 CAGATCCGGTGTGAGTCCCTCCCTGGAGAATGGCATATC---TTCCTGGCGGTAGGTGAT 2620441
Query 251940 TCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||| ||||||||||| |||||||||||| ||||||||||||||
Sbjct 2620440 ACCAATGGTTCCCTTTTGACCGTGACGAGAAGCAAACTTATCACCAAT 2620393
Score = 111 bits (122), Expect = 5e-19
Identities = 172/243 (71%), Gaps = 6/243 (2%)
Strand=Plus/Minus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||||| ||||| | ||||| | |||||| || || |||||||| | ||| ||
Sbjct 1573323 CATAACATCTTCGAGCGCCTTGACGAGACGACGTTGGATGTAACCAGTCTCGGCTGTCTT 1573264
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCG- 302683
|| ||||||||||| | ||| |||||||| |||| || |||||||| | |||||
Sbjct 1573263 GACTGCTGTATCAATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAGA---ATTCCGA 1573207
Query 302684 -GTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTC 302741
| || || || | || ||||| | || ||||||||||| | || ||||| | |||
Sbjct 1573206 AGGGGTGAGACCGCGAAGGTAGGAGTTTTCGACGAAACCACGGGATTCTGGCGAGTAGTC 1573147
Query 302742 GAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATC 302801
| ||| | || || ||||| ||||||| || |||| || || ||||||| ||| ||
Sbjct 1573146 GTCCTTTGAGAAATGCGGCAGTGTCCTGTACTTGAAGCCATAGGGAATACGCTGTCCTTC 1573087
Query 302802 AAC 302804
||
Sbjct 1573086 CAC 1573084
Score = 89.7 bits (98), Expect = 2e-12
Identities = 107/145 (74%), Gaps = 8/145 (6%)
Strand=Plus/Minus
Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332
|||||||||||||||||||||||||||||||| || || | |||||||||||| || |
Sbjct 2620895 GCACCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAACGCAGACCACCGTCCCTA 2620836
Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAA----CAGTTCTTGGACCCTGAGCACGATA 233388
| | ||||| ||| | || ||||| | || ||| ||||| ||||||||
Sbjct 2620835 GCACGACCCTCGACAGGCTGGCGAGTAAGAATTTGCAG----CGGACCACGAGCACGAGC 2620780
Query 233389 ATTAATTTTATCTTTAACCATATGC 233413
| ||| || || | |||||||||
Sbjct 2620779 GTGAATCTTGTCGTCGACCATATGC 2620755
>seq2
Length=2381493
Score = 86.0 bits (94), Expect = 2e-11
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 353938 TCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGA 353997
||||||||||| ||| | |||||| | ||| || || || || ||||| ||
Sbjct 724765 TCGGGGCAGAGAGCACCAACGAATTCTTCGTTATGCGAAATCATGATGACACCACCCTTG 724824
Query 353998 TAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGT 354057
||| ||| || |||||| |||| |||||||| ||||| | ||| || || |||
Sbjct 724825 TAGTCACGAATGGCAACAGCGAGACCACCGAGCGAGTCGCGGTCCAAGAAGTTGGTGGGT 724884
Query 354058 TCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACC 354117
||||| || | || | ||||| | ||||||| || | || || || ||||| |||
Sbjct 724885 TCGTCGAGAACGAGGAGATGCGGGTTGTTCCACATGGCACCGGCAAGCACAACCTTGACC 724944
Query 354118 TTCTGTCCGCCTGATAG 354134
|||||||| || || ||
Sbjct 724945 TTCTGTCCTCCGGAAAG 724961
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471817090843099
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |