Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq25 149 8e-30 seq21 149 8e-30 seq27 91.5 2e-12 >seq25 Length=2555362 Score = 149 bits (164), Expect = 8e-30 Identities = 137/171 (80%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 |||||| || |||| ||| | ||||| ||| | || || ||| | |||||||||| Sbjct 1728928 GTGGGATCAGAAGTTCATGC-AGGTCGACCAGGAGATGCTTTTCGAGATCATCCTCGCCG 1728986 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||| ||||||||| |||| ||||| | || |||||| | || || ||||||| Sbjct 1728987 CCAACTACCTGGACATCAAGGCTCTCCTCGACGTAGGATGCAAGACCGTCGCGAACATGA 1729046 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||| ||||| |||||||| |||||||| |||||| || ||| Sbjct 1729047 TCAAGGGCAAGTCACCCGATGAGATCCGTAAGACCTTCAACATCCAGAACG 1729097 >seq21 Length=3333843 Score = 149 bits (164), Expect = 8e-30 Identities = 213/300 (71%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||| ||||| || |||| ||| | || ||||||||||| | ||| ||||| || Sbjct 607933 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 607992 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| | | ||| | ||| | || || | |||| || | ||| Sbjct 607993 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 608052 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | ||| || ||||| |||||||| ||||| || Sbjct 608053 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 608112 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| | ||| ||||| ||||| ||||||| | ||||| Sbjct 608113 GATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCC 608172 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||| | ||| |||| || ||||| ||| | |||||| ||||||||| Sbjct 608173 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 608232 Score = 143 bits (158), Expect = 3e-28 Identities = 223/316 (71%), Gaps = 6/316 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| |||||| |||||| ||||||||||| || | || || || Sbjct 2203338 GCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATG 2203397 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | | |||| ||| || ||||| | | Sbjct 2203398 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC 2203457 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| ||||| ||||||||||| ||||||||||| ||||||||||||| Sbjct 2203458 AGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGC 2203517 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | ||||||| ||||| | ||| ||||||||||| || |||| Sbjct 2203518 AGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATG 2203577 Query 868931 ATCTGCCTG---GGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || ||| | | | | ||| ||||||||| |||| | | | |||| |||||| Sbjct 2203578 ATAGCTCTGACAGACTC-TGGGC--TGGGCTTGTTCTCGAGGAGAGAGAAGAGAAGGCAG 2203634 Query 868988 GCAAAGTCGCAGTGCA 869003 || |||||| ||||| Sbjct 2203635 GCGAAGTCGGTGTGCA 2203650 Score = 104 bits (114), Expect = 3e-16 Identities = 177/256 (69%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| | |||||| || ||| ||||| ||||| ||| | |||| | | ||| Sbjct 2203935 GAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCATCGTGCCTCGGGGATTTGT 2203994 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || | ||| || | | ||||||||| || ||||| ||| ||| ||||| Sbjct 2203995 ACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCATCGGAGGCTGCGAAG 2204054 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACAC-----CCAGT 869807 || || |||||||| ||| ||| ||||||||| ||| |||| || | ||||| Sbjct 2204055 AAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAG--ACGCTTGTTCCAGT 2204112 Query 869808 GGACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 | ||| | |||||| | |||||| |||||||||| || ||||||||||| | Sbjct 2204113 CGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAAGCCTCGGCCTTCT 2204172 Query 869868 TGTACATCTCCCATAC 869883 ||||||||| ||| || Sbjct 2204173 TGTACATCTGCCAGAC 2204188 Score = 100 bits (110), Expect = 3e-15 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| ||||||||| ||||||| ||||| ||||| ||||| || ||| ||||||||| Sbjct 607780 CATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTT 607839 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 |||||||||||| ||||| || | | | | ||| |||||||| ||||| ||||| Sbjct 607840 GCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTA 607899 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 | ||| ||||| || |||||| ||| || Sbjct 607900 GATGGCGAAGGCACCTGGACGCTTGTTGCCACC 607932 Score = 91.5 bits (100), Expect = 2e-12 Identities = 196/289 (68%), Gaps = 13/289 (4%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| || ||| | |||||| || | || |||||||| || ||||||||| Sbjct 2203653 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 2203712 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| ||||||| | |||| || ||| ||||| ||||| || ||||| || Sbjct 2203713 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 2203772 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGCC 869356 | | ||| || | ||| || ||| ||| | ||||| |||||| || ||| Sbjct 2203773 GCAACGAGGCGGTTGGCGAA--TGTGGAG----TTCTTGTCGGAGATCCATCGCAGGGCC 2203826 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||||||||| || | | | || | ||||||||||| ||||||| ||| Sbjct 2203827 CAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATGGCGTTGAAGAGGT--ACCTGC 2203884 Query 869417 TCGGC--CGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | || || || | | || |||||||| || || || |||||||| Sbjct 2203885 GCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAGAGTAGGTCTC 2203933 Score = 86.0 bits (94), Expect = 8e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 |||||||||| || ||||| ||||| ||||| | | || ||||| | || | Sbjct 1329912 AGGACAGCATAGGTGGCACAGTGACTTGCGTCATAAGAGGCTGCCCAACAGGCTTGGGAG 1329971 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 | || |||||||||||| | || ||| | | | || |||||||||||||| ||||| | Sbjct 1329972 AACCATGCTTTGACAAGCTGGAAGCCAAGTTGGGACATGCCATGCTGTCGATACCGGCGA 1330031 Query 19165 CCAAGGGATTCGAGATTGGC 19184 ||||||| || ||||| ||| Sbjct 1330032 CCAAGGGGTTTGAGATCGGC 1330051 >seq27 Length=2456559 Score = 91.5 bits (100), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 1852022 ACCTCGTCGGGATCGTCGAG---GCCGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTG 1852078 ||| |||| | |||||| || | ||||||||||| ||| || | ||||||||| Sbjct 706970 ACCACGTCTGCATCGTCTAGTACGTCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTT 707029 Query 1852079 CCGCTCTCGGTGAGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCG 1852138 || | | || || || || || | ||||| | || ||| ||||| | |||||| Sbjct 707030 CCTCCTT--GT-AGACCGGGAACCATGGGGTTCATCAAGTGCGCGCGCTCCTTGTAGCCG 707086 Query 1852139 AGGACCGGCAGGTGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAAC 1852198 | || ||| || || | || || |||||||||||||| || |||||| Sbjct 707087 ATCTTGGGAAGGACATCCTTTGCGAGTGCGAAGATCTTGCGCTGGTCTACACCTCCAAAC 707146 Query 1852199 TGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250 ||| |||| || || |||| |||||| || ||||| |||||||| ||||||| Sbjct 707147 TGGACGTCTACATCCAGGTACTGCTCATCAAGGGCTTGCATGAGTGGGTAGA 707198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136984253559