Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq21 212 6e-50 seq23 113 4e-20 >seq21 Length=3333843 Score = 212 bits (234), Expect = 6e-50 Identities = 970/1524 (64%), Gaps = 56/1524 (4%) Strand=Plus/Plus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || ||||| || | || || || || |||||| |||| | ||||| || Sbjct 606887 ACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAG 606946 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | |||||||| ||||||||||| | |||| || || |||||| || | | || Sbjct 606947 CACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGC 607006 Query 138628 GAATTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685 || || |||| |||||| ||| ||| ||||| || |||| ||||||||| | | Sbjct 607007 GAGTTGCGTACACCGTGCTCAGCAATCTTC--TCCTTCAGAGACGCCCAGTCCCAGAGGT 607064 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745 | ||||| | ||||||||||||||||| | || ||| | ||||| |||| Sbjct 607065 CAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACCCTGGGATACGGGAGATCCTT 607124 Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805 |||| | | ||| |||| || | || | ||| | ||| ||| ||| Sbjct 607125 CGTAGGTCTTGTAAGGGCCAAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCAT 607184 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865 ||| || || ||| || || |||||| || ||| | |||| | || | Sbjct 607185 GGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGAAAGGAA 607244 Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925 |||||| ||| || ||||| || ||||| || |||| |||| || || |||| Sbjct 607245 GGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTCGGTGGC 607304 Query 138926 GCAGATTTGACGCTTT-TGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTT 138984 | | | ||| || ||| |||||| ||| || | ||| || |||||||| ||||| Sbjct 607305 GGA-AGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTC 607363 Query 138985 AAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGT-TCAAAATCGTATGTGCCCCC 139043 || || || ||| |||| || | | | | | | | | || || | ||| | Sbjct 607364 AAGTTGCGGGTGACGACCTGTGT-GACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGC 607422 Query 139044 GTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGC 139103 |||| |||||| | | || | | || | || || | |||||| || || Sbjct 607423 CTTGTAGTCGACAAA----AGAAGGCAG--GGCAAGA---GAAGCCAAGTTGCAAACAGC 607473 Query 139104 CACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163 || || || || || |||| || ||||| || | |||| || | ||| || Sbjct 607474 GACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGT 607533 Query 139164 ACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGT 139223 ||| | || | || ||||| || ||||| ||||| || ||||| |||||| | || | Sbjct 607534 ACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTT 607593 Query 139224 GCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACG 139283 ||||| || |||| ||| | ||| | | ||| ||||| | | | Sbjct 607594 ACCAGTCTCGGTCTGTGCCTCAAGGATGGCGT--ACCAA------AGCTTTTGT-----G 607640 Query 139284 CACGTAAAGT-TCGTCGCGCTCGTACT---TTTCGTAGAGTTCGT---------CGAATC 139330 | || | ||| ||| | || || || |||||||| |||| ||||| Sbjct 607641 CGCGAACAGTCTCGCGACCCTTGTTCTGCTTTTCGTAGCTCTCGTACAGAGCTTCGAATT 607700 Query 139331 GTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGC 139390 |||||||||| | || | || | | |||| || || ||||| || | ||| || Sbjct 607701 CTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGC 607760 Query 139391 CGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGC 139450 |||| | | ||| ||| ||||||| || || |||||||||| |||| | | | ||||| Sbjct 607761 CGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGC 607820 Query 139451 GCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAG 139510 | || || ||| || ||| || || ||||||| |||| ||||||| Sbjct 607821 GAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAAGACGTCAG 607880 Query 139511 CGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---CCACCTTGATCGA 139567 |||||||||| || || |||||||| | || ||| || ||| ||||| || |||| Sbjct 607881 CGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGA 607940 Query 139568 CGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGT 139627 | | || ||| || ||| |||| || | ||| || |||||| | | |||||||| Sbjct 607941 CATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGT 608000 Query 139628 TGGTGCTACGGATGG----GACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATT 139683 | |||| || |||| | | || ||| || | | || || |||| ||| || Sbjct 608001 TAGTGCCACCGATGTATGAGCCAGT----AGCACGAATGCGGTGCACGTTGAGGCCAATA 608056 Query 139684 CCGCCGCCAAATTTGGATATTAAAACGCAA-TCGCGTAATGTCTCGTATATACCTCTTAT 139742 ||||| | ||||| || || | || || | | ||| ||||| || || || Sbjct 608057 CCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTG-AGTGTGTCGTAAATGCCGTCGAT 608115 Query 139743 GCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGC 139802 ||||| |||| ||| || || ||||||||||| | ||||||| | ||||| || Sbjct 608116 ACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCCCGC 608175 Query 139803 TGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTC 139862 |||| || || ||||| ||||| | || ||||| | ||||| || || Sbjct 608176 GTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTC 608235 Query 139863 GATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 |||||| || | || || ||||| || || |||| || ||||| ||||| ||||| Sbjct 608236 GATGGCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTG 608295 Query 139923 GATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTA 139982 || ||||| ||| ||| | || ||||| | ||| || |||||| | Sbjct 608296 TGGGCGCTCGGCGACCTTGCCGTTTATGCGGAGGAGATATGAGCGCTCAAGTGTCTTGAA 608355 Query 139983 GCCAAAGTACCTATAGTTGAAATC 140006 |||||| || |||||||| || Sbjct 608356 ACCAAAGAACTGGTAGTTGAAGTC 608379 >seq23 Length=2828041 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || |||||||| || ||| | | | Sbjct 925495 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 925554 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| || || || ||||| || ||| Sbjct 925555 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 925614 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || ||| |||| || | | | || || || ||| Sbjct 925615 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 925674 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || |||||||| || ||||| ||||||||| Sbjct 925675 ATCCAAAAGGAGTCCACACTTCACTTGGTG 925704 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || ||||| | ||||| || | | | Sbjct 925723 ATGCAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGC 925782 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||| ||||| || || || ||||| || || Sbjct 925783 GACACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 925842 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || || || || || |||||||| || ||| | ||||| || ||| Sbjct 925843 CAGCGTCTCATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAAC 925902 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || || || ||||||||| Sbjct 925903 ATCCAGAAGGAGTCTACTCTCCACTTGGTG 925932 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 ||||| || || || || || || || || | ||||||| | || | || || | Sbjct 925291 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 925350 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||||||||| || || || ||||| ||||| ||||| | ||||| ||||| || Sbjct 925351 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 925410 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || ||||| | | | |||| || || |||||||| ||||| || ||||| ||| Sbjct 925411 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 925470 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 | || | || ||||||| || Sbjct 925471 CTTGTCCTCCGCCTGCGCGGTGG 925493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897448159560