Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq24 114 1e-20 >seq24 Length=2678833 Score = 114 bits (126), Expect = 1e-20 Identities = 228/333 (68%), Gaps = 6/333 (2%) Strand=Plus/Minus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 || ||||| ||||| | || | | || | || ||||| |||||| |||||||| Sbjct 1058286 TCGGTCTCGGGGTTCTTGCACTTCTTGCAGAGGACGAACTTTGAGATGAAGCCATCAAGG 1058227 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 |||||| | ||| || ||| |||| ||||||| ||| | || || | ||| Sbjct 1058226 TAGTCCTGGAGCTTGCTGGCGTCATGGGCACCGTTGATGATCCAACGGTCATCGTTGGGG 1058167 Query 34438 -TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTT--TGTCGGGTAAATGGCC 34494 ||| || || || || || || ||| | || |||||||| || || | | || Sbjct 1058166 CTCGTGTTG-GTCTGAGCTCCGAGTTCGAAACCAAAGTACTTGATGACGTGAGCAGGG-- 1058110 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || || | || | || || | | || |||||| ||||| ||||||||||||||| Sbjct 1058109 GGGCGGGCGAGAGACTGAGCCACGCTGCTCAGGTTGACAATGACGGTCTTGATGCCGTTG 1058050 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 ||||| ||||||| ||||| ||||||| ||| |||||||||||||| | ||| | Sbjct 1058049 CCCTTGCCTTCGATCTTGGACTGGATGCGCTCCATCTTGTAGCGGTAGAAGGGGTCGGTG 1057990 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 |||| |||| || ||| || || |||| ||| Sbjct 1057989 ACATCGCGGCGAATGTTGACGGTAGCCATGGTG 1057957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841464149311