Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq25 145 1e-28 seq21 136 6e-26 seq27 102 1e-15 seq26 86.0 1e-10 >seq25 Length=2555362 Score = 145 bits (160), Expect = 1e-28 Identities = 122/150 (81%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 |||||||||| | || || ||| | |||||||||||||||||||| ||||||||| Sbjct 1728948 AGGTCGACCAGGAGATGCTTTTCGAGATCATCCTCGCCGCCAACTACCTGGACATCAAGG 1729007 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | |||||||| | || ||||||||||| || ||| | |||||||||||||| ||||| | Sbjct 1729008 CTCTCCTCGACGTAGGATGCAAGACCGTCGCGAACATGATCAAGGGCAAGTCACCCGATG 1729067 Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | ||||| |||||||| |||||| || ||| Sbjct 1729068 AGATCCGTAAGACCTTCAACATCCAGAACG 1729097 >seq21 Length=3333843 Score = 136 bits (150), Expect = 6e-26 Identities = 210/300 (70%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||||||||| || |||| ||| | || ||||||||||| | || ||||| || Sbjct 607933 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 607992 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| | | ||| | ||| | || || | |||| || | ||| Sbjct 607993 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 608052 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 || ||||| || | ||||||||| | ||| || | || || || ||||| ||||| || Sbjct 608053 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 608112 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || ||||| ||||| ||||||| | ||||| Sbjct 608113 GATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCC 608172 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839 || ||||| | ||| |||| || ||| | ||| ||| |||||| |||||||| Sbjct 608173 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 608232 Score = 131 bits (144), Expect = 3e-24 Identities = 179/250 (72%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 |||| || ||||| || ||||| |||||| |||||| ||||||||||| || | | Sbjct 2203330 TGACACCGGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCA 2203389 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | || || |||||| | ||| ||||||| | ||||| ||| || |||| Sbjct 2203390 GAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGA 2203449 Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070 | | | ||||| ||||| |||||||| || ||||| ||||||||||| | ||||||| Sbjct 2203450 GGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCA 2203509 Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130 |||||| || || || || | ||||| | ||||| | ||| ||||||||||| | Sbjct 2203510 TGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTT 2203569 Query 794131 CGATGATGAT 794140 | ||||||| Sbjct 2203570 CAGTGATGAT 2203579 Score = 118 bits (130), Expect = 2e-20 Identities = 203/292 (70%), Gaps = 7/292 (2%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || |||||||| || ||||||||||||||||| ||||||| |||| || ||| Sbjct 2203689 AGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAG 2203748 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 ||||| ||||| || ||||| || | ||||| || | ||| || ||| | || Sbjct 2203749 AAGATACCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTG---GAGTTCTTG 2203805 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 | | |||||| || ||||| || ||||| || | | |||| | |||||||| Sbjct 2203806 TCGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATG 2203865 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGAC--CGGGTCCTTGACGTAGGTGTCGATGAGGAGCG 794614 ||| ||||||| ||| | | | || || | | ||| ||||||||||| || | Sbjct 2203866 GCGTTGAAGAGGT--ACCTGCGCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAG 2203923 Query 794615 AGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 |||||||||||||||| | ||| || || ||| ||||| || || ||||| Sbjct 2203924 AGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCA 2203975 Score = 107 bits (118), Expect = 3e-17 Identities = 287/437 (66%), Gaps = 16/437 (4%) Strand=Plus/Plus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGG 2071641 ||| ||||||||||||| | || |||| || ||||||| ||||||||| | || Sbjct 607504 CTCAGTGCACAGGTTGGAG--CTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 607561 Query 2071642 TTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATG 2071701 ||| |||||||||| ||||| |||| ||| |||||| |||| ||| | |||| Sbjct 607562 TTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATG 607621 Query 2071702 GCCGACCAAA--TTTGGCGCGCGGGCAC---CGAGGTCCTCGCGCGGCCCTNNNNNNNNN 2071756 || |||||| ||| | ||||| || || | ||| | | || | Sbjct 607622 GCGTACCAAAGCTTTTGTGCGCGAACAGTCTCGCGACCCTTGTTCTGCTTTTCGTAGCTC 607681 Query 2071757 NNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGG 2071816 | || || || || | | |||| | ||| ||||| || |||| Sbjct 607682 TCGT-----ACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGT 607736 Query 2071817 ACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACC-ACGCGGCGCATAAACAGGTCGCAC 2071875 |||||| | || | ||||| |||| ||| || || ||| || ||||| Sbjct 607737 TCGGGCACATCAGTGTCCAGTTGCCGTT-GTCTTGGACACGCTTCATGAAGAGGTCAGGA 607795 Query 2071876 GTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTC 2071935 ||||||| |||| ||||||||||| || ||| ||||||||||||||||||||| | Sbjct 607796 ATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGC 607855 Query 2071936 AGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCC 2071995 ||||| || | | | || ||| |||||||| ||||| |||||| ||| ||||| || Sbjct 607856 AGGTCAAGGAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCT 607915 Query 2071996 TTGCGCTTGCCGCCGCC 2072012 |||||| ||| || Sbjct 607916 GGACGCTTGTTGCCACC 607932 Score = 104 bits (114), Expect = 4e-16 Identities = 147/206 (71%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 |||||||| | ||| || || | ||| || | | |||||||| || ||||| Sbjct 2203980 GCCTCGGGGATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCA 2204039 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268 ||| ||| ||||| |||||||||||||| ||| ||| |||||||| ||| |||| Sbjct 2204040 TCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGA 2204099 Query 796269 --CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | | ||||| | ||| | |||||||| |||||| |||||||| || || Sbjct 2204100 CGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAA 2204159 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352 ||||||||||| |||||||||| ||| Sbjct 2204160 GCCTCGGCCTTCTTGTACATCTGCCA 2204185 >seq27 Length=2456559 Score = 102 bits (112), Expect = 1e-15 Identities = 166/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 2411365 ACCTCGTCGCAATCGTCGAGA---TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTG 2411421 ||| |||| |||||| || || ||||||||| ||| || | ||||||||| Sbjct 706970 ACCACGTCTGCATCGTCTAGTACGTCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTT 707029 Query 2411422 CCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCC 2411481 || |||||| || || || |||| ||||| | || ||| ||||| |||||| Sbjct 707030 CC-TCCTTGTAGA--CCGGGAACCATGGGGTTCATCAAGTGCGCGCGCTCCTTGTAGCCG 707086 Query 2411482 AGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAAC 2411541 | | || ||| || || | || ||||||||||||||||| || |||||| Sbjct 707087 ATCTTGGGAAGGACATCCTTTGCGAGTGCGAAGATCTTGCGCTGGTCTACACCTCCAAAC 707146 Query 2411542 TGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAG 2411597 ||| |||| || || |||| |||||| || ||||| |||||||| ||||||| ||| Sbjct 707147 TGGACGTCTACATCCAGGTACTGCTCATCAAGGGCTTGCATGAGTGGGTAGATGAG 707202 >seq26 Length=2547288 Score = 86.0 bits (94), Expect = 1e-10 Identities = 236/356 (66%), Gaps = 12/356 (3%) Strand=Plus/Minus Query 2019048 GGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAG 2019107 ||||| |||||| |||| || || || ||| |||| | || | ||| | | ||| Sbjct 1037480 GGCAAAACCACGTCCATCCTCTGTCTCGCACGCCAGCTCCTCGGTGACGCCTACAAAGAG 1037421 Query 2019108 GCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATC 2019167 || || ||||||||||| || || |||||||| || | |||||||| || | | || Sbjct 1037420 GCTGTTCTCGAACTCAACGCCTCTGACGAGCGTGGTATCGACGTCGTACGCAACAGGATA 1037361 Query 2019168 AA--GCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCC 2019225 || || || ||| ||| | | || || | || ||| | || ||| | |||| | Sbjct 1037360 AAGGGCTTCGCGC--AGAAGAAAGTCACACTTGCACCAGGCAGGCAAAAGCTCGTCATTC 1037303 Query 2019226 TCGATGAGGCCGACTGCCTTACGTCGGCG--GCCCAGCAGGCCCTCCGATCGACCATGGA 2019283 | |||||||| ||| || | || | ||| || ||||| ||||| | ||| ||||| Sbjct 1037302 TGGATGAGGCGGACAGCATGAC--CAGCGGTGCGCAGCAAGCCCTGAGGAGGACAATGGA 1037245 Query 2019284 AAAGTACA--CCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATC 2019341 | |||| ||||| || |||||||| | || |||||| |||| | | |||| Sbjct 1037244 GATCTACAGTGCAACA--ACACGGTTTGCATTCGCTTGCAACCAGTCGAACAAGATCATT 1037187 Query 2019342 GAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCA 2019397 || | || ||| | || ||||| | | | || ||||| ||||| || || Sbjct 1037186 GAGCCGCTGCAGTCGAGATGTGCCATACTCAGATACGCTCGCCTTACCGATGCGCA 1037131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916243527886853