Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq25 145 1e-28
seq21 136 6e-26
seq27 102 1e-15
seq26 86.0 1e-10
>seq25
Length=2555362
Score = 145 bits (160), Expect = 1e-28
Identities = 122/150 (81%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671
|||||||||| | || || ||| | |||||||||||||||||||| |||||||||
Sbjct 1728948 AGGTCGACCAGGAGATGCTTTTCGAGATCATCCTCGCCGCCAACTACCTGGACATCAAGG 1729007
Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731
| |||||||| | || ||||||||||| || ||| | |||||||||||||| ||||| |
Sbjct 1729008 CTCTCCTCGACGTAGGATGCAAGACCGTCGCGAACATGATCAAGGGCAAGTCACCCGATG 1729067
Query 2035732 ACATCCGCAAGACCTTTAACATCAAGTACG 2035761
| ||||| |||||||| |||||| || |||
Sbjct 1729068 AGATCCGTAAGACCTTCAACATCCAGAACG 1729097
>seq21
Length=3333843
Score = 136 bits (150), Expect = 6e-26
Identities = 210/300 (70%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599
||||||||||||||| || |||| ||| | || ||||||||||| | || ||||| ||
Sbjct 607933 CTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGA 607992
Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659
||||| ||||| | | ||| | ||| | || || | |||| || | |||
Sbjct 607993 TGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCC 608052
Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719
|| ||||| || | ||||||||| | ||| || | || || || ||||| ||||| ||
Sbjct 608053 AATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTC 608112
Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779
||| ||| |||||||||| | || ||||| ||||| ||||||| | |||||
Sbjct 608113 GATACTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCC 608172
Query 2073780 GGCATTGAAGAGCGTGGGCGTCGCCGCCGTGTACGACTGTTGGGACATGGCCTCGTAGGT 2073839
|| ||||| | ||| |||| || ||| | ||| ||| |||||| ||||||||
Sbjct 608173 CGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGT 608232
Score = 131 bits (144), Expect = 3e-24
Identities = 179/250 (72%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950
|||| || ||||| || ||||| |||||| |||||| ||||||||||| || | |
Sbjct 2203330 TGACACCGGCCTTCTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCA 2203389
Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010
| || || |||||| | ||| ||||||| | ||||| ||| || ||||
Sbjct 2203390 GAGAAATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGA 2203449
Query 794011 GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCA 794070
| | | ||||| ||||| |||||||| || ||||| ||||||||||| | |||||||
Sbjct 2203450 GGGCCAACAGCAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCA 2203509
Query 794071 TGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCT 794130
|||||| || || || || | ||||| | ||||| | ||| ||||||||||| |
Sbjct 2203510 TGCCGAGCAGAGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTT 2203569
Query 794131 CGATGATGAT 794140
| |||||||
Sbjct 2203570 CAGTGATGAT 2203579
Score = 118 bits (130), Expect = 2e-20
Identities = 203/292 (70%), Gaps = 7/292 (2%)
Strand=Plus/Plus
Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436
|| |||||||| || ||||||||||||||||| ||||||| |||| || |||
Sbjct 2203689 AGACCGGGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAG 2203748
Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496
||||| ||||| || ||||| || | ||||| || | ||| || ||| | ||
Sbjct 2203749 AAGATACCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTG---GAGTTCTTG 2203805
Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556
| | |||||| || ||||| || ||||| || | | |||| | ||||||||
Sbjct 2203806 TCGGAGATCCATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGTTGTCGATG 2203865
Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGAC--CGGGTCCTTGACGTAGGTGTCGATGAGGAGCG 794614
||| ||||||| ||| | | | || || | | ||| ||||||||||| || |
Sbjct 2203866 GCGTTGAAGAGGT--ACCTGCGCTGCTTGGGCTCGCTAATGTATGTGTCGATGAGCAGAG 2203923
Query 794615 AGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
|||||||||||||||| | ||| || || ||| ||||| || || |||||
Sbjct 2203924 AGTAGGTCTCTGAGTGAACGTTCTCCATCATGATTTGGAAACCGTAGAAGCA 2203975
Score = 107 bits (118), Expect = 3e-17
Identities = 287/437 (66%), Gaps = 16/437 (4%)
Strand=Plus/Plus
Query 2071584 CTCGGTGCACAGGTTGGCCGACATCG--TGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGG 2071641
||| ||||||||||||| | || |||| || ||||||| ||||||||| | ||
Sbjct 607504 CTCAGTGCACAGGTTGGAG--CTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGG 607561
Query 2071642 TTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATG 2071701
||| |||||||||| ||||| |||| ||| |||||| |||| ||| | ||||
Sbjct 607562 TTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATG 607621
Query 2071702 GCCGACCAAA--TTTGGCGCGCGGGCAC---CGAGGTCCTCGCGCGGCCCTNNNNNNNNN 2071756
|| |||||| ||| | ||||| || || | ||| | | || |
Sbjct 607622 GCGTACCAAAGCTTTTGTGCGCGAACAGTCTCGCGACCCTTGTTCTGCTTTTCGTAGCTC 607681
Query 2071757 NNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGG 2071816
| || || || || | | |||| | ||| ||||| || ||||
Sbjct 607682 TCGT-----ACAGAGCTTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCACTCGT 607736
Query 2071817 ACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACC-ACGCGGCGCATAAACAGGTCGCAC 2071875
|||||| | || | ||||| |||| ||| || || ||| || |||||
Sbjct 607737 TCGGGCACATCAGTGTCCAGTTGCCGTT-GTCTTGGACACGCTTCATGAAGAGGTCAGGA 607795
Query 2071876 GTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTC 2071935
||||||| |||| ||||||||||| || ||| ||||||||||||||||||||| |
Sbjct 607796 ATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGC 607855
Query 2071936 AGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCC 2071995
||||| || | | | || ||| |||||||| ||||| |||||| ||| ||||| ||
Sbjct 607856 AGGTCAAGGAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGCACCT 607915
Query 2071996 TTGCGCTTGCCGCCGCC 2072012
|||||| ||| ||
Sbjct 607916 GGACGCTTGTTGCCACC 607932
Score = 104 bits (114), Expect = 4e-16
Identities = 147/206 (71%), Gaps = 3/206 (1%)
Strand=Plus/Plus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
|||||||| | ||| || || | ||| || | | |||||||| || |||||
Sbjct 2203980 GCCTCGGGGATTTGTACTTCGCTAGAGAATCGCTCAACAAGGTTCTCGTTGACAATGCCA 2204039
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268
||| ||| ||||| |||||||||||||| ||| ||| |||||||| ||| ||||
Sbjct 2204040 TCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCATCGTTGAGA 2204099
Query 796269 --CGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326
| | ||||| | ||| | |||||||| |||||| |||||||| || ||
Sbjct 2204100 CGCTTGTTCCAGTCGTGAAGGTCCTTGGAGAGGTCGATCTCCTCTGCGGTCCAGAAAGAA 2204159
Query 796327 GCCTCGGCCTTTTTGTACATCTCCCA 796352
||||||||||| |||||||||| |||
Sbjct 2204160 GCCTCGGCCTTCTTGTACATCTGCCA 2204185
>seq27
Length=2456559
Score = 102 bits (112), Expect = 1e-15
Identities = 166/236 (70%), Gaps = 6/236 (3%)
Strand=Plus/Plus
Query 2411365 ACCTCGTCGCAATCGTCGAGA---TCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTG 2411421
||| |||| |||||| || || ||||||||| ||| || | |||||||||
Sbjct 706970 ACCACGTCTGCATCGTCTAGTACGTCGATCTTGGAGTCGGGGTCCGAAGAGCTCATCTTT 707029
Query 2411422 CCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCC 2411481
|| |||||| || || || |||| ||||| | || ||| ||||| ||||||
Sbjct 707030 CC-TCCTTGTAGA--CCGGGAACCATGGGGTTCATCAAGTGCGCGCGCTCCTTGTAGCCG 707086
Query 2411482 AGCGCCGGCAGGTGGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAAC 2411541
| | || ||| || || | || ||||||||||||||||| || ||||||
Sbjct 707087 ATCTTGGGAAGGACATCCTTTGCGAGTGCGAAGATCTTGCGCTGGTCTACACCTCCAAAC 707146
Query 2411542 TGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAG 2411597
||| |||| || || |||| |||||| || ||||| |||||||| ||||||| |||
Sbjct 707147 TGGACGTCTACATCCAGGTACTGCTCATCAAGGGCTTGCATGAGTGGGTAGATGAG 707202
>seq26
Length=2547288
Score = 86.0 bits (94), Expect = 1e-10
Identities = 236/356 (66%), Gaps = 12/356 (3%)
Strand=Plus/Minus
Query 2019048 GGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCTCTTGGGCGCGGCCGCCGACGAG 2019107
||||| |||||| |||| || || || ||| |||| | || | ||| | | |||
Sbjct 1037480 GGCAAAACCACGTCCATCCTCTGTCTCGCACGCCAGCTCCTCGGTGACGCCTACAAAGAG 1037421
Query 2019108 GCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCATC 2019167
|| || ||||||||||| || || |||||||| || | |||||||| || | | ||
Sbjct 1037420 GCTGTTCTCGAACTCAACGCCTCTGACGAGCGTGGTATCGACGTCGTACGCAACAGGATA 1037361
Query 2019168 AA--GCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCC 2019225
|| || || ||| ||| | | || || | || ||| | || ||| | |||| |
Sbjct 1037360 AAGGGCTTCGCGC--AGAAGAAAGTCACACTTGCACCAGGCAGGCAAAAGCTCGTCATTC 1037303
Query 2019226 TCGATGAGGCCGACTGCCTTACGTCGGCG--GCCCAGCAGGCCCTCCGATCGACCATGGA 2019283
| |||||||| ||| || | || | ||| || ||||| ||||| | ||| |||||
Sbjct 1037302 TGGATGAGGCGGACAGCATGAC--CAGCGGTGCGCAGCAAGCCCTGAGGAGGACAATGGA 1037245
Query 2019284 AAAGTACA--CCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATC 2019341
| |||| ||||| || |||||||| | || |||||| |||| | | ||||
Sbjct 1037244 GATCTACAGTGCAACA--ACACGGTTTGCATTCGCTTGCAACCAGTCGAACAAGATCATT 1037187
Query 2019342 GAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCA 2019397
|| | || ||| | || ||||| | | | || ||||| ||||| || ||
Sbjct 1037186 GAGCCGCTGCAGTCGAGATGTGCCATACTCAGATACGCTCGCCTTACCGATGCGCA 1037131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916243527886853
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