Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq21 306 4e-78
seq23 111 2e-19
seq12 84.2 2e-11
>seq21
Length=3333843
Score = 306 bits (338), Expect = 4e-78
Identities = 1134/1760 (64%), Gaps = 63/1760 (4%)
Strand=Plus/Plus
Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111
|||||| |||||||||||| || ||||||||||||||||| ||||||| | ||
Sbjct 606673 CGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTCAATGATCC---TTCG 606729
Query 148112 CTTC---ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168
|| | ||||||||| | |||||||| || ||| | | || || ||| | ||
Sbjct 606730 CTGCGAGATCTCCCAGACGGTCTTGTAAAGAGTCTTTGTCTCCTCAGGGATGTTGGGAAT 606789
Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228
| | || || | | || | || | || ||| | || | | ||
Sbjct 606790 CCTGGCAATAGAACCTCCATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACC 606849
Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288
| |||| ||||| | || || | | || || ||||| ||||| || ||||| ||
Sbjct 606850 CATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGAC 606909
Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348
|| || ||| | |||| || | || || || ||||||||||||||| ||||||
Sbjct 606910 ACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 606969
Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408
| || | || || |||||| || | |||||||||||||| | |||| | |
Sbjct 606970 TGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGC 607029
Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468
|| || |||||||| ||||||||||||||| | ||||| || |||||||| ||
Sbjct 607030 AATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATC 607089
Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528
|||||| || || || || |||| || ||||| | |||| || || | |
Sbjct 607090 GTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGGCCAAGTTC 607149
Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588
| || | ||||| | ||| || | | ||| || |||||| ||||| |
Sbjct 607150 CTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGAT 607209
Query 148589 GTTGAGCAGCGCCGC--CGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCG 148646
||||||| | || || || | ||| | || | || || | || || |||
Sbjct 607210 GTTGAGCTTCTTAGCTTCGTCTGAC--TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCG 607267
Query 148647 GCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC 148706
||||| || || || |||| || ||||| ||||| | |||| | |||| || |||
Sbjct 607268 GCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTC 607326
Query 148707 -TCGAGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTG 148764
|||| || ||||||||| |||||||||||| ||||| ||||| || |||| ||
Sbjct 607327 TTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTCAAG-TTGCGGGTGACGACCTGTG 607385
Query 148765 TAATTCTGCGCAGC------AATTCAAA---ATCGTACTTGTCATCTACGATGCATCGGT 148815
| | | | | ||| || ||||| || ||||| || || | | |
Sbjct 607386 TGACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGG-- 607443
Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875
|| ||| | ||| || | ||||| || || |||||| || ||| ||||||| || |
Sbjct 607444 -CAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAA 607502
Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935
|||| | |||||| ||| || ||| || | |||||| || |||||||||| ||
Sbjct 607503 TCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGT 607562
Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT-- 148993
|||| ||||||||||| ||||| | || ||||| || ||| | || | ||
Sbjct 607563 TGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGG 607622
Query 148994 -GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCC---TCCTGC---T 149046
| ||| | || | || ||||| || | | ||||||| | |||| |
Sbjct 607623 CGTACCAA---AGCTTTTGTGCGCGAACAGTC------TCGCGACCCTTGTTCTGCTTTT 607673
Query 149047 CGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104
|||| | ||| | ||| ||||| | || |||||| |||| |||| || |||||
Sbjct 607674 CGTAGCTCTCGTACAGAGC--TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCA 607731
Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164
|| || ||||||||| || | ||| ||||| | | || |||||||| || || ||
Sbjct 607732 CTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTC 607791
Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG 149224
|| | ||| || ||||| | ||| ||||| || | || || ||| |||
Sbjct 607792 AGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTT 607851
Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284
|||||||| || | | || | ||| |||||||| ||||| | ||| | |||| ||
Sbjct 607852 GCGCAGGTCAAGGAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGC 607911
Query 149285 GCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341
|| ||| ||||| ||||||||||| | ||| | ||||||| | || || |
Sbjct 607912 ACCTGGACGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAG 607971
Query 149342 CATAGGTTCAATG---CCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGC 149398
||| || |||| || | | || |||||||| | ||| ||| ||
Sbjct 607972 CATGGG---AATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGC 608028
Query 149399 TCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTC 149458
|| | ||||||||||| ||| || ||||| || ||| ||||| ||| |||
Sbjct 608029 ACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGT 608088
Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518
||| || ||| ||||| ||||| ||||| ||||||| | || ||||| ||
Sbjct 608089 CTTGAGTGTGTCGTAAATGCCGTCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGA 608148
Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA 149578
|||||||||| | | ||||| || ||||| || || ||||||||| || ||
Sbjct 608149 CGACATTTGCGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 608208
Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638
|| || ||| ||||| | ||||| | || |||||||| || || |||||
Sbjct 608209 CTTTTGAGACATGTAGTCGTAGGTCTCGATGGCTTTCTCGATGTCATCACCGTGAATGCC 608268
Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTT 149695
| || || ||||| ||||| || || || ||||| || || || |||| ||
Sbjct 608269 AACAGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTT---ATGCG 608325
Query 149696 GAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCC 149755
||| | || | || ||||||||| | |||||| ||| ||||| ||||| ||| |
Sbjct 608326 GAGGAGATATGAGCGCTCAAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTC 608385
Query 149756 GTGGTCAATGGCGGCGTCGA 149775
|| | | || || | || ||
Sbjct 608386 GTAGACGATAGCCGAGTTGA 608405
Score = 158 bits (174), Expect = 1e-33
Identities = 353/521 (68%), Gaps = 13/521 (2%)
Strand=Plus/Plus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| ||| ||||||||||| ||||| || ||||| || || || ||| |||||||| |
Sbjct 2203343 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 2203402
Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470
||| || ||||| |||||| | |||| || || | ||| | | |||||
Sbjct 2203403 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAACAGCAG 2203462
Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529
||||| || || ||||| ||||| | ||||||| || | ||||||||||| |||| |
Sbjct 2203463 ACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTA-GCGTTCATGCCGAGCAGAG 2203521
Query 120530 CCACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588
| || | | || || | || ||||||| |||||| || || || || ||| ||
Sbjct 2203522 CGCATGGTAGTG-CGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGATA 2203580
Query 120589 GC---GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645
|| || || | | ||| | || ||||| |||| | | | | || |||||
Sbjct 2203581 GCTCTGA-CAGACTCTGGGCTGG--GCTTGTTCTCGAGGAGAG---AGAAGAGAAGGCAG 2203634
Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705
|| ||||| ||||||| ||||||||| || || || ||||||||| || || || |||
Sbjct 2203635 GCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCG 2203694
Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765
||||| | || | |||||| |||| |||| ||| || || ||||| |
Sbjct 2203695 GGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATA 2203754
Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825
||||| || ||| || || || | ||| | ||| || || | ||||| | ||||
Sbjct 2203755 CCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGGAGATC 2203814
Query 120826 CACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866
|| || |||||| |||||||| ||||| | ||| || ||
Sbjct 2203815 CATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAT 2203855
>seq23
Length=2828041
Score = 111 bits (122), Expect = 2e-19
Identities = 145/199 (73%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521
|| ||||| ||||| || ||||| || | ||| || || || || |||||||| |
Sbjct 925919 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCG--TCTTCCAGCTGCTTAC 925862
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| ||| ||||||| ||||||||||| |||||||| || |||||||| |||||| ||
Sbjct 925861 CAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 925802
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
| | | || | ||||||| | | ||| || || | || | ||| || ||||| ||||
Sbjct 925801 TTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAG 925742
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 925741 TCTTGACAAAGATCTGCAT 925723
Score = 109 bits (120), Expect = 5e-19
Identities = 129/175 (74%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| ||||| || ||||| ||| || ||| ||||||||| ||||| ||
Sbjct 925463 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 925404
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || || || ||||| || ||||||||||| |||||||| ||||||| ||||
Sbjct 925403 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 925344
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638
| | || | ||||||| | ||| || || | |||| ||| ||||||||||
Sbjct 925343 ACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 925289
Score = 98.7 bits (108), Expect = 1e-15
Identities = 132/181 (73%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||| || || ||||| || ||||| ||| || ||| ||| | ||||| ||||
Sbjct 925189 ATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCCTCAAGCT 925131
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
||||||| ||| | || | ||||||||||| || || ||||| |||||||| |||||
Sbjct 925130 GCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT 925071
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||||| | || | ||||| | | ||| || |||| ||||| ||| || ||||
Sbjct 925070 TGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGG 925011
Query 133636 T 133636
|
Sbjct 925010 T 925010
>seq12
Length=3815900
Score = 84.2 bits (92), Expect = 2e-11
Identities = 96/129 (74%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535
||| | ||||| |||| |||||||||| || ||||||||||| |||||||| |||
Sbjct 3017931 GGCATGCACGTCCACGCCTTTGGCGACAACACAAACGGCTGCACATCCGCCGGTCCCCAC 3017990
Query 116536 TTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGAC 116595
||||||||| | | || ||||| || || | | || | || ||||||||||||
Sbjct 3017991 TTCAACCCCCACAACAAGACACACGGTGCCCCTGAGGACGAGGAGCGCCACGTCGGTGAC 3018050
Query 116596 CTGGGCAAC 116604
||||||||
Sbjct 3018051 TTGGGCAAC 3018059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420636845480
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