Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq21 306 4e-78 seq23 111 2e-19 seq12 84.2 2e-11 >seq21 Length=3333843 Score = 306 bits (338), Expect = 4e-78 Identities = 1134/1760 (64%), Gaps = 63/1760 (4%) Strand=Plus/Plus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111 |||||| |||||||||||| || ||||||||||||||||| ||||||| | || Sbjct 606673 CGACTGAGACTGGTCAATGAAAGCACCACGGTCAGCGGCCATCTCAATGATCC---TTCG 606729 Query 148112 CTTC---ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGAT 148168 || | ||||||||| | |||||||| || ||| | | || || ||| | || Sbjct 606730 CTGCGAGATCTCCCAGACGGTCTTGTAAAGAGTCTTTGTCTCCTCAGGGATGTTGGGAAT 606789 Query 148169 GCGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTT 148228 | | || || | | || | || | || ||| | || | | || Sbjct 606790 CCTGGCAATAGAACCTCCATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACC 606849 Query 148229 GAGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCAC 148288 | |||| ||||| | || || | | || || ||||| ||||| || ||||| || Sbjct 606850 CATGTCGACAAGGTCCTTGAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGAC 606909 Query 148289 GCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTG 148348 || || ||| | |||| || | || || || ||||||||||||||| |||||| Sbjct 606910 ACGGCGGGAATAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTG 606969 Query 148349 CGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTT 148408 | || | || || |||||| || | |||||||||||||| | |||| | | Sbjct 606970 TGAAGTGGAGGCAGTTGGCATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGC 607029 Query 148409 TATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTC 148468 || || |||||||| ||||||||||||||| | ||||| || |||||||| || Sbjct 607030 AATCTTCTCCTTCAGAGACGCCCAGTCCCAGAGGTCAGTAGGTGTGACATTCCACATATC 607089 Query 148469 GTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGC 148528 |||||| || || || || |||| || ||||| | |||| || || | | Sbjct 607090 GTACTGGAGGATACCCTGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGGCCAAGTTC 607149 Query 148529 CGCCGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCT 148588 | || | ||||| | ||| || | | ||| || |||||| ||||| | Sbjct 607150 CTTTGCGATGTCGCATGAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGAT 607209 Query 148589 GTTGAGCAGCGCCGC--CGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCG 148646 ||||||| | || || || | ||| | || | || || | || || ||| Sbjct 607210 GTTGAGCTTCTTAGCTTCGTCTGAC--TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCG 607267 Query 148647 GCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC 148706 ||||| || || || |||| || ||||| ||||| | |||| | |||| || ||| Sbjct 607268 GCAAGACCTTGAACACCCATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTC 607326 Query 148707 -TCGAGCGGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTG 148764 |||| || ||||||||| |||||||||||| ||||| ||||| || |||| || Sbjct 607327 TTCGACAGGGTAGTGGTTGACCTCGATGATCTTGTTCAAG-TTGCGGGTGACGACCTGTG 607385 Query 148765 TAATTCTGCGCAGC------AATTCAAA---ATCGTACTTGTCATCTACGATGCATCGGT 148815 | | | | | ||| || ||||| || ||||| || || | | | Sbjct 607386 TGACTTCGTGGAGCTTCTTGAAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGG-- 607443 Query 148816 TCACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGA 148875 || ||| | ||| || | ||||| || || |||||| || ||| ||||||| || | Sbjct 607444 -CAGGGCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAA 607502 Query 148876 TCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGT 148935 |||| | |||||| ||| || ||| || | |||||| || |||||||||| || Sbjct 607503 TCTCAGTGCACAGGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGT 607562 Query 148936 TGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT-- 148993 |||| ||||||||||| ||||| | || ||||| || ||| | || | || Sbjct 607563 TGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGG 607622 Query 148994 -GAACCGATGCAGGTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCC---TCCTGC---T 149046 | ||| | || | || ||||| || | | ||||||| | |||| | Sbjct 607623 CGTACCAA---AGCTTTTGTGCGCGAACAGTC------TCGCGACCCTTGTTCTGCTTTT 607673 Query 149047 CGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCA 149104 |||| | ||| | ||| ||||| | || |||||| |||| |||| || ||||| Sbjct 607674 CGTAGCTCTCGTACAGAGC--TTCGAATTCTTCACCGTAGACATCGGCGAGGCCAGGGCA 607731 Query 149105 CTTGTGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATC 149164 || || ||||||||| || | ||| ||||| | | || |||||||| || || || Sbjct 607732 CTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTC 607791 Query 149165 GGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCG 149224 || | ||| || ||||| | ||| ||||| || | || || ||| ||| Sbjct 607792 AGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTT 607851 Query 149225 GCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGC 149284 |||||||| || | | || | ||| |||||||| ||||| | ||| | |||| || Sbjct 607852 GCGCAGGTCAAGGAAACCAAAGACGTCAGCGTGCCATGGCTCTAGGTAGATGGCGAAGGC 607911 Query 149285 GCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAAC 149341 || ||| ||||| ||||||||||| | ||| | ||||||| | || || | Sbjct 607912 ACCTGGACGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAG 607971 Query 149342 CATAGGTTCAATG---CCACTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGC 149398 ||| || |||| || | | || |||||||| | ||| ||| || Sbjct 607972 CATGGG---AATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGC 608028 Query 149399 TCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTC 149458 || | ||||||||||| ||| || ||||| || ||| ||||| ||| ||| Sbjct 608029 ACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGT 608088 Query 149459 GCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGA 149518 ||| || ||| ||||| ||||| ||||| ||||||| | || ||||| || Sbjct 608089 CTTGAGTGTGTCGTAAATGCCGTCGATACTGTCCTCCTTCATGTCGATGAGGAAGCATGA 608148 Query 149519 GCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA 149578 |||||||||| | | ||||| || ||||| || || ||||||||| || || Sbjct 608149 CGACATTTGCGGTGATGGTGTGCCCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTA 608208 Query 149579 TTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCC 149638 || || ||| ||||| | ||||| | || |||||||| || || ||||| Sbjct 608209 CTTTTGAGACATGTAGTCGTAGGTCTCGATGGCTTTCTCGATGTCATCACCGTGAATGCC 608268 Query 149639 TATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTT---GTTTCCAATTTT 149695 | || || ||||| ||||| || || || ||||| || || || |||| || Sbjct 608269 AACAGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCCGTTT---ATGCG 608325 Query 149696 GAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCC 149755 ||| | || | || ||||||||| | |||||| ||| ||||| ||||| ||| | Sbjct 608326 GAGGAGATATGAGCGCTCAAGTGTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTC 608385 Query 149756 GTGGTCAATGGCGGCGTCGA 149775 || | | || || | || || Sbjct 608386 GTAGACGATAGCCGAGTTGA 608405 Score = 158 bits (174), Expect = 1e-33 Identities = 353/521 (68%), Gaps = 13/521 (2%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| ||||||||||| ||||| || ||||| || || || ||| |||||||| | Sbjct 2203343 CTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTC 2203402 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || ||||| |||||| | |||| || || | ||| | | ||||| Sbjct 2203403 CATGAAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAACAGCAG 2203462 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATG-GACTGCGCGTTCATGCCCAGCAACG 120529 ||||| || || ||||| ||||| | ||||||| || | ||||||||||| |||| | Sbjct 2203463 ACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTA-GCGTTCATGCCGAGCAGAG 2203521 Query 120530 CCACCGGCAACGCCGACG-TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG 120588 | || | | || || | || ||||||| |||||| || || || || ||| || Sbjct 2203522 CGCATGGTAGTG-CGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGATA 2203580 Query 120589 GC---GAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCAC 120645 || || || | | ||| | || ||||| |||| | | | | || ||||| Sbjct 2203581 GCTCTGA-CAGACTCTGGGCTGG--GCTTGTTCTCGAGGAGAG---AGAAGAGAAGGCAG 2203634 Query 120646 GCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCG 120705 || ||||| ||||||| ||||||||| || || || ||||||||| || || || ||| Sbjct 2203635 GCGAAGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCG 2203694 Query 120706 GGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACG 120765 ||||| | || | |||||| |||| |||| ||| || || ||||| | Sbjct 2203695 GGCATCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATA 2203754 Query 120766 CCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATC 120825 ||||| || ||| || || || | ||| | ||| || || | ||||| | |||| Sbjct 2203755 CCCTCAACAGCGGCGAATGCAACGAGGCGGTTGGCGAATGTGGAGTTCTTGTCGGAGATC 2203814 Query 120826 CACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCAT 120866 || || |||||| |||||||| ||||| | ||| || || Sbjct 2203815 CATCGCAGGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGAT 2203855 >seq23 Length=2828041 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGC 133521 || ||||| ||||| || ||||| || | ||| || || || || |||||||| | Sbjct 925919 GTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCG--TCTTCCAGCTGCTTAC 925862 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| ||||||| ||||||||||| |||||||| || |||||||| |||||| || Sbjct 925861 CAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACT 925802 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||||| | | ||| || || | || | ||| || ||||| |||| Sbjct 925801 TTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAG 925742 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 925741 TCTTGACAAAGATCTGCAT 925723 Score = 109 bits (120), Expect = 5e-19 Identities = 129/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| ||| || ||| ||||||||| ||||| || Sbjct 925463 GTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCG 925404 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || || ||||| || ||||||||||| |||||||| ||||||| |||| Sbjct 925403 GCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTG 925344 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCA 133638 | | || | ||||||| | ||| || || | |||| ||| |||||||||| Sbjct 925343 ACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 925289 Score = 98.7 bits (108), Expect = 1e-15 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| || ||| ||| | ||||| |||| Sbjct 925189 ATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCA-TCCTCAAGCT 925131 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || | ||||||||||| || || ||||| |||||||| ||||| Sbjct 925130 GCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCT 925071 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | ||||| | | ||| || |||| ||||| ||| || |||| Sbjct 925070 TGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGG 925011 Query 133636 T 133636 | Sbjct 925010 T 925010 >seq12 Length=3815900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 116476 GGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAACAC 116535 ||| | ||||| |||| |||||||||| || ||||||||||| |||||||| ||| Sbjct 3017931 GGCATGCACGTCCACGCCTTTGGCGACAACACAAACGGCTGCACATCCGCCGGTCCCCAC 3017990 Query 116536 TTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGTGAC 116595 ||||||||| | | || ||||| || || | | || | || |||||||||||| Sbjct 3017991 TTCAACCCCCACAACAAGACACACGGTGCCCCTGAGGACGAGGAGCGCCACGTCGGTGAC 3018050 Query 116596 CTGGGCAAC 116604 |||||||| Sbjct 3018051 TTGGGCAAC 3018059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420636845480