Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq23 91.5 3e-13
>seq23
Length=2828041
Score = 91.5 bits (100), Expect = 3e-13
Identities = 92/120 (77%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || ||| |||||| || | || |||||||||||||||
Sbjct 925579 AAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAACAGCGTCTCATCTTCGCCGGAAAG 925638
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||||||||||| || | ||| | |||| |||||| |||| || ||||| || ||||||
Sbjct 925639 CAGTTGGAAGACGGCCGTACTCTCTCCGACTACAACATCCAAAAGGAGTCCACACTTCAC 925698
Score = 86.0 bits (94), Expect = 1e-11
Identities = 130/185 (70%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253
|| || || || |||||| | || || || || ||||| |||| || ||| |
Sbjct 925291 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 925350
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| ||||| || || || || ||||| ||| | ||||||||||||||||||
Sbjct 925351 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 925410
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
|| | || || || | || || |||| |||||| | ||||| ||||| || || |||
Sbjct 925411 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 925470
Query 206374 CTTGT 206378
|||||
Sbjct 925471 CTTGT 925475
Score = 84.2 bits (92), Expect = 5e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || || || ||||| || || || |||||||| || | |||
Sbjct 925726 CAGATCTTTGTCAAGACTCTTACCGGAAAGACCATTACATTGGAAGTCGAGTCTAGCGAC 925785
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| |||| |||||| ||||| || || || || || || || ||| ||
Sbjct 925786 ACGATCGACAATGTAAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAG 925845
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
| || || ||||| || |||||| ||||||| || | || | | || |||||| ||
Sbjct 925846 CGTCTCATTTTCGCTGGTAAGCAGCTGGAAGACGGCCGAACGCTCTCAGACTACAACATC 925905
Query 206353 CAGAAAGAGTCTACTCTTCAC 206373
||||| ||||||||||| |||
Sbjct 925906 CAGAAGGAGTCTACTCTCCAC 925926
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181820391163867
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |