Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq21 226 3e-54
>seq21
Length=3333843
Score = 226 bits (250), Expect = 3e-54
Identities = 979/1535 (64%), Gaps = 35/1535 (2%)
Strand=Plus/Plus
Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952
||||| || || ||||| || || || ||||| | | ||| | ||| ||| | |||
Sbjct 606881 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 606940
Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012
|| || |||| || ||||| | || || | |||| || || |||||| || |
Sbjct 606941 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 607000
Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072
| || || || || | ||||| | || || || ||||||| || |||||||||
Sbjct 607001 AGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 607060
Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGG----CGGG 147128
| | || || || |||||||| ||||||||||| | || |||| ||||
Sbjct 607061 AGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACC----CTGGGATACGGG 607116
Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCC--GTCGCGCTGCGCCAATTCACAGCTTGCCTCG 147186
| || || | || |||| || || | |||| | || || | |
Sbjct 607117 AGATCCTTCGTAGGTCTTGTAAGGGCCAAGTTCCTTTGCG--ATGTCGCATGAGGAAGTG 607174
Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246
|| || ||| ||| ||||| ||| |||||| |||| || | ||||| || |
Sbjct 607175 AGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGAC 607234
Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306
||| |||| | || || | ||||||||||| | ||| || | ||| | |||||
Sbjct 607235 TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATG 607294
Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCG-CTATGGGATAGTGGTTGCGATCAAT 147365
||||| || ||||||||| || ||| | | || ||||||||| || ||
Sbjct 607295 GGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACCTCGAT 607353
Query 147366 AATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA 147425
|||||||| | ||| || || || | || | | | ||| |||| ||| ||| |
Sbjct 607354 GATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAA 607413
Query 147426 -AGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484
| || | ||| | || || | || ||| | ||| |||| ||||| || |
Sbjct 607414 CACGCCGGCCTTGTAGTCG-ACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACAG 607472
Query 147485 CCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGA 147544
| ||| || | || |||||| ||| || || | |||||||||| || |||
Sbjct 607473 CGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGG 607532
Query 147545 CTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 147604
|| | || | ||| ||||| || || ||||| ||||| ||| ||||||| | ||
Sbjct 607533 TACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGT 607592
Query 147605 CGCCGGTCTCGACTTGCGTTTCAACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCC 147661
|| |||||| || | |||| ||| ||| | || | || || || ||
Sbjct 607593 TACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGC---TTTTGTGCGCGAACAG 607649
Query 147662 GCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721
|| ||| | || |||||||| | |||||||| || || || || ||||
Sbjct 607650 TCTCGCGACCCTTGTTCTGCTTTTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGT 607709
Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781
|| |||||| ||||| || |||| | ||| |||||||| | ||| || ||| | |
Sbjct 607710 AGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTT 607769
Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGC 147841
|| || ||| || || || || | |||||| ||||| | |||||||| || |
Sbjct 607770 GGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGA 607829
Query 147842 AATCCTCGGCGCCCATGTT---GCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCC 147898
||||| ||| ||| ||| || | ||| | | | ||| ||| |||||||
Sbjct 607830 CCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAAACCAAAGACGTCAGCGTGCC 607886
Query 147899 AGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGC 147955
| || || | ||||| ||| | |||||| |||||| || ||||||||||||| ||
Sbjct 607887 ATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAGC 607946
Query 147956 GCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGG 148015
| | ||||||| | || || | |||||| || ||| | | || ||||| |||
Sbjct 607947 GAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGC 608006
Query 148016 AATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGT 148075
| ||| | ||| || || | ||||||||| | |||||| ||||| ||
Sbjct 608007 CACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGG 608066
Query 148076 ACTTTGATATGGCAGCGCAATCGCCC--AATGTCGTGTAGATGCCGTCGATGCTGTCGTT 148133
||| || || || |||| | | | ||| ||| ||||||||||| ||||| |
Sbjct 608067 TCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATACTGTCCTC 608124
Query 148134 TTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAG 148193
|| | | | | | || || || |||||||||| | || ||||| ||| |
Sbjct 608125 CTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCCCGCGTTGAACAA 608184
Query 148194 GGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTC 148253
|| || ||||| || || | |||||| ||| | || ||||| || || |
Sbjct 608185 CGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCTTT 608244
Query 148254 TTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313
|||||||| || ||||||||||| | || || |||||||||||||| ||||| || ||
Sbjct 608245 CTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGGCGCTC 608304
Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373
||| || | ||| || ||| |||||| || || || ||| |||||||| |
Sbjct 608305 GGCGACCTTGCCGTTTATGCGGAGGAGATATGAGCGCTCAAGTGTCTTGAAACCAAAGAA 608364
Query 148374 CTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408
|| ||| | || || | ||||| |||| ||||
Sbjct 608365 CTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCG 608399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476611039143720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |