Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq21 226 3e-54 >seq21 Length=3333843 Score = 226 bits (250), Expect = 3e-54 Identities = 979/1535 (64%), Gaps = 35/1535 (2%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| || || ||||| || || || ||||| | | ||| | ||| ||| | ||| Sbjct 606881 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 606940 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || || |||| || ||||| | || || | |||| || || |||||| || | Sbjct 606941 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 607000 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || || || | ||||| | || || || ||||||| || ||||||||| Sbjct 607001 AGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 607060 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGG----CGGG 147128 | | || || || |||||||| ||||||||||| | || |||| |||| Sbjct 607061 AGGTCAGTAGGTGTGACATTCCACATATCGTACTGGAGGATACC----CTGGGATACGGG 607116 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCC--GTCGCGCTGCGCCAATTCACAGCTTGCCTCG 147186 | || || | || |||| || || | |||| | || || | | Sbjct 607117 AGATCCTTCGTAGGTCTTGTAAGGGCCAAGTTCCTTTGCG--ATGTCGCATGAGGAAGTG 607174 Query 147187 AGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTC 147246 || || ||| ||| ||||| ||| |||||| |||| || | ||||| || | Sbjct 607175 AGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGAC 607234 Query 147247 TCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATA 147306 ||| |||| | || || | ||||||||||| | ||| || | ||| | ||||| Sbjct 607235 TCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATG 607294 Query 147307 GGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCG-CTATGGGATAGTGGTTGCGATCAAT 147365 ||||| || ||||||||| || ||| | | || ||||||||| || || Sbjct 607295 GGTCGGTGGCGGAAGTTGCTGCGGCGTGC-CTCTTCGACAGGGTAGTGGTTGACCTCGAT 607353 Query 147366 AATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATA 147425 |||||||| | ||| || || || | || | | | ||| |||| ||| ||| | Sbjct 607354 GATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAA 607413 Query 147426 -AGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGG 147484 | || | ||| | || || | || ||| | ||| |||| ||||| || | Sbjct 607414 CACGCCGGCCTTGTAGTCG-ACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACAG 607472 Query 147485 CCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGA 147544 | ||| || | || |||||| ||| || || | |||||||||| || ||| Sbjct 607473 CGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGG 607532 Query 147545 CTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTC 147604 || | || | ||| ||||| || || ||||| ||||| ||| ||||||| | || Sbjct 607533 TACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGT 607592 Query 147605 CGCCGGTCTCGACTTGCGTTTCAACGATAA---ACCTATGCAGGTCCTGCGCTCGCACCC 147661 || |||||| || | |||| ||| ||| | || | || || || || Sbjct 607593 TACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGC---TTTTGTGCGCGAACAG 607649 Query 147662 GCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721 || ||| | || |||||||| | |||||||| || || || || |||| Sbjct 607650 TCTCGCGACCCTTGTTCTGCTTTTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGT 607709 Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781 || |||||| ||||| || |||| | ||| |||||||| | ||| || ||| | | Sbjct 607710 AGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTT 607769 Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGC 147841 || || ||| || || || || | |||||| ||||| | |||||||| || | Sbjct 607770 GGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGA 607829 Query 147842 AATCCTCGGCGCCCATGTT---GCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCC 147898 ||||| ||| ||| ||| || | ||| | | | ||| ||| ||||||| Sbjct 607830 CCTCCTCCTTGCCGTGGTTCTTGCG---CAGGTCAAGGAAACCAAAGACGTCAGCGTGCC 607886 Query 147899 AGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGC 147955 | || || | ||||| ||| | |||||| |||||| || ||||||||||||| || Sbjct 607887 ATGGCTCTAGGTAGATGGCGAAGGCACCTGGACGCTTGTTGCCACCCTGGTCGACATAGC 607946 Query 147956 GCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGG 148015 | | ||||||| | || || | |||||| || ||| | | || ||||| ||| Sbjct 607947 GAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGC 608006 Query 148016 AATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGT 148075 | ||| | ||| || || | ||||||||| | |||||| ||||| || Sbjct 608007 CACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCGG 608066 Query 148076 ACTTTGATATGGCAGCGCAATCGCCC--AATGTCGTGTAGATGCCGTCGATGCTGTCGTT 148133 ||| || || || |||| | | | ||| ||| ||||||||||| ||||| | Sbjct 608067 TCTTGGAGAT--CAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATACTGTCCTC 608124 Query 148134 TTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAG 148193 || | | | | | || || || |||||||||| | || ||||| ||| | Sbjct 608125 CTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCCCGCGTTGAACAA 608184 Query 148194 GGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTC 148253 || || ||||| || || | |||||| ||| | || ||||| || || | Sbjct 608185 CGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCTTT 608244 Query 148254 TTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 |||||||| || ||||||||||| | || || |||||||||||||| ||||| || || Sbjct 608245 CTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGGCGCTC 608304 Query 148314 GGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTA 148373 ||| || | ||| || ||| |||||| || || || ||| |||||||| | Sbjct 608305 GGCGACCTTGCCGTTTATGCGGAGGAGATATGAGCGCTCAAGTGTCTTGAAACCAAAGAA 608364 Query 148374 CTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || ||| | || || | ||||| |||| |||| Sbjct 608365 CTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCG 608399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611039143720