Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq23 123 2e-23 >seq23 Length=2828041 Score = 123 bits (136), Expect = 2e-23 Identities = 168/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 35505 TATT-TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAA 35563 |||| ||| ||||| | | | |||||| || | ||| |||||| || |||||||| Sbjct 925955 TATTGTCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAG 925896 Query 35564 TCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCC 35623 || | | ||||| |||| |||||||||||||| || || || | ||||||||||| Sbjct 925895 TCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCA 925836 Query 35624 GAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT 35683 | ||| | | |||||||||| |||||| ||| | | | | | ||||||||| || Sbjct 925835 GGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGAC 925776 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || || || || || || | ||| || ||||| |||||||| Sbjct 925775 TCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 925723 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || ||||||||| |||||||| |||| Sbjct 925721 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 925662 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| |||| |||||| || || || || | ||||| ||||||| |||| Sbjct 925661 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 925602 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACC-GTGTCGCTCGATTCCAC 35688 | | ||||||||| |||||| ||| | |||| || |||||||| |||||||| Sbjct 925601 ATACCCTCCTTGTCTTGGATCTTCGACTTGAC-GTTGTCAATAGTGTCGCTTGATTCCAC 925543 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | |||||| || || || |||| || || || || || ||||| Sbjct 925542 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || ||| || | || || |||||||| || || || Sbjct 925176 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAG 925117 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTT 35652 ||||| ||||||||||| | |||| || |||||||||| |||||| Sbjct 925116 ATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 925070 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| |||| || ||| || |||| || || ||||| || || || Sbjct 925458 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAA 925399 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||| |||| ||| | || ||||||||| ||||||| ||| | || Sbjct 925398 GATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGGATCTTTGACTTGA-CGT 925340 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 || | | |||||| || || ||||| | ||||| || || || |||| Sbjct 925339 TGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 925289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793447857160