Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq21 134 1e-26
seq23 113 5e-20
>seq21
Length=3333843
Score = 134 bits (148), Expect = 1e-26
Identities = 539/839 (64%), Gaps = 15/839 (2%)
Strand=Plus/Minus
Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623
||||||||||| |||| || || || ||||||||||| || ||||| || ||| |
Sbjct 608295 CAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATCGAGAAAGCCATC 608236
Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683
|| || ||| | |||||| || | || || ||||| ||||| || |||| |
Sbjct 608235 GAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAAC 608176
Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743
||||||||| | || ||| |||| || || || | | |||| || |||||
Sbjct 608175 GCGGGCACACCATCACCGCAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAGT 608116
Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGG 7802
||||||||||||||| |||| || | || || || || ||||| || |||||
Sbjct 608115 ATCGACGGCATTTACGACACACT-CAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGG 608057
Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862
|| || || ||||| || | | || || | || ||||| ||| |||||
Sbjct 608056 TATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATACATCGGTGGCACTAACGG 607997
Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922
|| | | | |||| | |||||| | || || | ||| ||| | | || |||| ||
Sbjct 607996 AACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCGA 607937
Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979
|||||| || ||||| ||| ||| |||||||| | ||||| |||||||| ||
Sbjct 607936 CCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCTAGAGCCATGGCACGCTGA 607877
Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGA 8039
| | | | | || | ||||| ||| || || || | || |||||
Sbjct 607876 CGTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGA 607817
Query 8040 TCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACA 8099
||| |||| || ||||| | || || || || |||| ||| || || | ||| |
Sbjct 607816 TCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAAGACAACGGCAA 607757
Query 8100 ATGGTCGCTCATGTGCCCCGATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAAT 8158
||| | || ||||| ||||| || |||||| | | || |||||| | |||
Sbjct 607756 CTGGACACTGATGTG-CCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAAT 607698
Query 8159 TTGAACAATTGTACAAACAATACGAACA--CGACGGCGCGTACGTGCGGCAAGTGAAAGC 8216
| ||| ||||| | |||||| | || | || || | | | || ||
Sbjct 607697 TCGAAGCTCTGTACGAGAGCTACGAAAAGCAGAACAAGGGT-CGCGAG---ACTGTTCGC 607642
Query 8217 GCGC--GACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274
|| | | || |||||| | || || | ||| || |||| || | |||
Sbjct 607641 GCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTTTATG 607582
Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334
|| ||||| |||||||||||| ||| ||||| || | ||| | || ||||| | ||
Sbjct 607581 CTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGC 607522
Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAA 8393
||| |||||| |||| ||||| |||||| ||| || || || || || ||||||||
Sbjct 607521 TCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTGCAA 607463
>seq23
Length=2828041
Score = 113 bits (124), Expect = 5e-20
Identities = 136/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || ||||| ||||| ||||||||||||||| | |||| | ||| |||
Sbjct 925475 ACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 925416
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
|| || || || || || || | || |||||||| || || ||||| || || |||||
Sbjct 925415 AGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGG 925356
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| ||| ||||| ||| | |||||||| || || || || ||||| ||||| ||
Sbjct 925355 ATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTG 925296
Query 134685 CCGGT 134689
|||||
Sbjct 925295 CCGGT 925291
Score = 109 bits (120), Expect = 6e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||| | || || | ||||| || || || |||||||| || ||||||||||||
Sbjct 925212 CCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 925153
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| || || || ||||| ||||| || || ||||| |||||||| || || ||
Sbjct 925152 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 925093
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || || || || || ||||| ||| | ||||| || || || ||
Sbjct 925092 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACC 925033
Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689
||||| || ||||| || |||||
Sbjct 925032 TCGAGGGTGATGGTCTTTCCGGT 925010
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| || | ||| || | ||| | ||| || ||||| |||||||| ||||||||||||
Sbjct 925721 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 925662
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| || | ||| || || || || || | |||||| || || || ||
Sbjct 925661 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 925602
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || ||||| || || ||||| ||| | |||||| ||||||||
Sbjct 925601 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 925542
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||||| || ||||| || || || | || || ||||| ||||||||
Sbjct 925541 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505398229428040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |