Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq21 134 1e-26 seq23 113 5e-20 >seq21 Length=3333843 Score = 134 bits (148), Expect = 1e-26 Identities = 539/839 (64%), Gaps = 15/839 (2%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||||||||| |||| || || || ||||||||||| || ||||| || ||| | Sbjct 608295 CAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATCGAGAAAGCCATC 608236 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | |||||| || | || || ||||| ||||| || |||| | Sbjct 608235 GAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAAC 608176 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 ||||||||| | || ||| |||| || || || | | |||| || ||||| Sbjct 608175 GCGGGCACACCATCACCGCAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAGT 608116 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGG 7802 ||||||||||||||| |||| || | || || || || ||||| || ||||| Sbjct 608115 ATCGACGGCATTTACGACACACT-CAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGG 608057 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || || || ||||| || | | || || | || ||||| ||| ||||| Sbjct 608056 TATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCATACATCGGTGGCACTAACGG 607997 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 || | | | |||| | |||||| | || || | ||| ||| | | || |||| || Sbjct 607996 AACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCGA 607937 Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| || ||||| ||| ||| |||||||| | ||||| |||||||| || Sbjct 607936 CCAGGGTGGCAACAAGCGTCCAGGTGCCTTCGCCATCTACCTAGAGCCATGGCACGCTGA 607877 Query 7980 CATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCGA 8039 | | | | | || | ||||| ||| || || || | || ||||| Sbjct 607876 CGTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGA 607817 Query 8040 TCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACA 8099 ||| |||| || ||||| | || || || || |||| ||| || || | ||| | Sbjct 607816 TCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAAGACAACGGCAA 607757 Query 8100 ATGGTCGCTCATGTGCCCCGATCG-TTGCCCTTTATTAAAAAACGTTTACGGTTCAAAAT 8158 ||| | || ||||| ||||| || |||||| | | || |||||| | ||| Sbjct 607756 CTGGACACTGATGTG-CCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAAT 607698 Query 8159 TTGAACAATTGTACAAACAATACGAACA--CGACGGCGCGTACGTGCGGCAAGTGAAAGC 8216 | ||| ||||| | |||||| | || | || || | | | || || Sbjct 607697 TCGAAGCTCTGTACGAGAGCTACGAAAAGCAGAACAAGGGT-CGCGAG---ACTGTTCGC 607642 Query 8217 GCGC--GACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATG 8274 || | | || |||||| | || || | ||| || |||| || | ||| Sbjct 607641 GCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCCCTTTATG 607582 Query 8275 CTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGC 8334 || ||||| |||||||||||| ||| ||||| || | ||| | || ||||| | || Sbjct 607581 CTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATCCGCAGC 607522 Query 8335 AGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAA 8393 ||| |||||| |||| ||||| |||||| ||| || || || || || |||||||| Sbjct 607521 TCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGTTTGCAA 607463 >seq23 Length=2828041 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| ||||| ||||||||||||||| | |||| | ||| ||| Sbjct 925475 ACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCG 925416 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || || || || | || |||||||| || || ||||| || || ||||| Sbjct 925415 AGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTGTCTTGG 925356 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || ||| ||||| ||| | |||||||| || || || || ||||| ||||| || Sbjct 925355 ATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATGGTCTTG 925296 Query 134685 CCGGT 134689 ||||| Sbjct 925295 CCGGT 925291 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | ||||| || || || |||||||| || |||||||||||| Sbjct 925212 CCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 925153 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| || || || ||||| ||||| || || ||||| |||||||| || || || Sbjct 925152 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 925093 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||| || || || || Sbjct 925092 ATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACC 925033 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 ||||| || ||||| || ||||| Sbjct 925032 TCGAGGGTGATGGTCTTTCCGGT 925010 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || ||||| |||||||| |||||||||||| Sbjct 925721 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 925662 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || | ||| || || || || || | |||||| || || || || Sbjct 925661 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 925602 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||| || || ||||| ||| | |||||| |||||||| Sbjct 925601 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 925542 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || || || | || || ||||| |||||||| Sbjct 925541 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398229428040