Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq21 102 3e-16 >seq21 Length=3333843 Score = 102 bits (112), Expect = 3e-16 Identities = 360/547 (66%), Gaps = 29/547 (5%) Strand=Plus/Minus Query 443337 TTTTGGACCATGGAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTA 443396 || |||||| |||||||| || |||||||||||| | ||| |||||| | || || Sbjct 2204155 TTCTGGACCGCAGAGGAGATCGACCTCTCCAAGGACCTTCACGACTGGAACAAGCGTCTC 2204096 Query 443397 TCTAGCCATGAAC-GCGATTTCTTCAAATGCA---TCTTGGCCTTCTTTGCACCGAGCGA 443452 | | |||| ||| || ||||| | | || | |||||||| ||| | ||| Sbjct 2204095 ---AACGATGACGAGCGCTT-CTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGA 2204040 Query 443453 CGGTATCGTCGGTGAGAATCTGGTGACGCGTTTCTA---CGAAATGGTAGTGTACACCGA 443509 || || ||| ||||| || || ||| |||| |||| | | | | |||| Sbjct 2204039 TGGCATTGTCAACGAGAACCTTGTTGAGCGATTCTCTAGCGAAGTACAAAT---CCCCGA 2203983 Query 443510 GGCCCGCTACTTCTACGCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAG 443569 ||| || | |||||||| |||||| | ||||||||| ||||| | ||| |||| Sbjct 2203982 GGCACGATGCTTCTACGGTTTCCAAATCATGATGGAGAACGTTCACTCAGAGACCTACTC 2203923 Query 443570 TCAGTTGATCAAGACACTAATTCCGAACGAAGACGAACAGCG---GTCCATCTTCTCATC 443626 || | | ||| | ||| ||| | ||| | | ||||| || | ||||| | | Sbjct 2203922 TCTGCTCATCGACACATACATT---AGCGAGCCCAAGCAGCGCAGGTACCTCTTC--AAC 2203868 Query 443627 GTTCAT-GACCACG--CCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGA 443683 | ||| ||| || || ||||| | ||| | |||||| | ||| || Sbjct 2203867 GC-CATCGACAACATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCCTGCGATGGATCTC 2203809 Query 443684 ACGAGAAAATCTCAGC-TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGT 443742 ||| || | ||| | |||| | | || || || || || || | || || || | | Sbjct 2203808 -CGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCT 2203750 Query 443743 TGTTTAGCGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGT 443802 | || ||||| |||| ||||||||||||||| | || ||||| || || |||| |||| Sbjct 2203749 TCTTCAGCGGTT-CTTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGT 2203691 Query 443803 CTGACCTTTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGT 443862 || || || ||||| || ||| || |||||||| |||| |||||||||||| Sbjct 2203690 CTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCATGCACACCGACTTCGCCTGC 2203631 Query 443863 CTTCTCT 443869 ||||||| Sbjct 2203630 CTTCTCT 2203624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588335450535015