Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq21 273 3e-68 >seq21 Length=3333843 Score = 273 bits (302), Expect = 3e-68 Identities = 1119/1741 (64%), Gaps = 35/1741 (2%) Strand=Plus/Plus Query 110363 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGA 110421 |||||||||||||| || ||||| || || ||||| || || | |||||||||| Sbjct 606575 CGGAGATAGTACATGCCAGTCTTCAGACCAGCCTTCCA-GCCAGCAAAGTGCATAGAAGT 606633 Query 110422 GAGCTTGGACATCGTTGGACTTTCCATGAAGAGGTTCA--TACTTTGACTTTGGTCAATG 110479 || |||| ||| || || | |||| || ||| | ||| ||| ||||||||| Sbjct 606634 GATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTTAGCGACTGAGAC--TGGTCAATG 606691 Query 110480 AAGCGCCCCCGTTGTGCCGCCATATCAATGACATCCTT--CATCTTAATTTCCCAAACTG 110537 || || || | || ||||| |||||| |||||| | | || ||||| || | Sbjct 606692 AAAGCACCACGGTCAGCGGCCATCTCAATG--ATCCTTCGCTGCGAGATCTCCCAGACGG 606749 Query 110538 TGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG--ATGGAACCCCC 110595 | || ||| |||| | || || ||||| | || || || |||| || ||||| || Sbjct 606750 TCTTGTAAAGAGTCTTTGTCTCCTCAGGGATGT-TGGGA-ATCCTGGCAATAGAACCTCC 606807 Query 110596 CGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATT 110655 | | || | | |||||| | || ||||| ||||| || | ||||| || Sbjct 606808 ATCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTT 606867 Query 110656 GACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTT 110715 || | |||||||| |||||||| |||||| | | |||||||| Sbjct 606868 GAGCAACCATGGGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTT 606927 Query 110716 TGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGG 110775 | |||||||| || ||||| || || || |||| || |||| |||||||| ||||| Sbjct 606928 GGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGG 606987 Query 110776 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAAC 110835 ||| ||||| || | || ||| || | ||| | ||| || ||||| ||| Sbjct 606988 CATGGGTGCAATGAGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGA 607047 Query 110836 ATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCT 110893 |||||| | || | || | ||| | || || |||||| || |||| || | || Sbjct 607048 CGCCCAGTCCCAGAGGTCAG-TAGGTGTGACATT-CCACATATCGTACTGGAGGATACCC 607105 Query 110894 TGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 110953 ||||| ||||||| || || |||| | || | || | | | || | || || Sbjct 607106 TGGGATACGGGAGATCCTTCGTAGGTCTTGTAAGGGCCAAGTTCCTTTGCGATGTCGCAT 607165 Query 110954 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 111013 | || | || || || ||||| || ||||| | || | || ||| ||| Sbjct 607166 GAGGAAGTGAGAGCAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCT 607225 Query 111014 TCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCC 111073 || ||||| || || | |||| | || |||| || ||||||||||||||| Sbjct 607226 TCGTCTGACTCGAAAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCC 607285 Query 111074 AAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTT 111133 | ||| || |||| ||| || | || || || || || || || || Sbjct 607286 ATACCGATGGGTCGGTGGCGGAAGTTGCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTG 607345 Query 111134 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 111193 || |||| ||| | || ||| || | || ||||| ||| || || || | Sbjct 607346 ACCTCGATGATCTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTG 607405 Query 111194 TAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTG 111253 | ||||| || | || | | |||| | || ||||| | || ||||| ||| Sbjct 607406 AAGTCAAACACGCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTG 607465 Query 111254 CAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTC 111313 |||||||| |||||| | | |||||||| | ||| || || || | |||||| || Sbjct 607466 CAAACAGCGACCTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTG 607525 Query 111314 TTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATG 111373 || || || | ||||| ||||| ||||| |||||| || |||||||||||||| Sbjct 607526 CGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATA 607585 Query 111374 TAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGT 111433 |||| | || ||||| ||||||| | || || || | ||||| | || | Sbjct 607586 AAGGGGTTACCAGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGCGA 607645 Query 111434 ACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTC 111492 ||| | || | ||| | || | ||||| | ||| || ||||| || || || Sbjct 607646 ACAGTCTCG-CGACCCTTGTTCTGCTTTTCGTAGCTCTCGTACAGAGCTTCGAATTCTTC 607704 Query 111493 ACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| | |||| ||| || || || || || || | || | ||| | || Sbjct 607705 ACCGTAGACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTT 607764 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACA 111612 || | || ||||||||||| ||||| ||||||||||| | | |||||||| | | Sbjct 607765 GTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGC 607824 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTG 111672 || |||| || | || ||||| || | |||||||| | | || || ||||| Sbjct 607825 GCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAAGACGTCAGCGTG 607884 Query 111673 CCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAGCTTGATTTAC 111726 ||||||||| || |||| |||| | || | ||||| ||| | || | || Sbjct 607885 CCATGGCTCTAGGTAGATGGCGAAGGCACC---TGGACGCTTGTTGCCACCCTGGTCGAC 607941 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 |||||| || ||| ||| |||| || ||||| ||||| | ||| | ||| || || Sbjct 607942 ATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTT 608001 Query 111787 TGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCC 111844 || || |||| || ||| | | || | | || | || | |||||||| Sbjct 608002 AGTGCCACCGATGTATGAG--CCAGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCG 608059 Query 111845 CCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAG 111904 ||||| ||| ||||| |||||| | | || || | || || |||| ||| | Sbjct 608060 CCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATACTG 608119 Query 111905 TCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTG 111964 |||||||| || |||| |||||||| ||||| |||||| |||||| || || ||| Sbjct 608120 TCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCCCGCGTTG 608179 Query 111965 AAGAGGGTTGGTGTTGCGTGAATGAACATAC-CTTGGGACATCTTGTCGTATGTCTCCAA 112023 || | || || | ||||| |||| ||| ||| ||||| | |||||| ||||| | Sbjct 608180 AACAACGTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGAT 608238 Query 112024 GACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 | | || ||||| || ||||| ||||| | || || ||||||| ||||| ||||| Sbjct 608239 GGCTTTCTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 608298 Query 112084 G 112084 | Sbjct 608299 G 608299 Score = 113 bits (124), Expect = 6e-20 Identities = 300/454 (66%), Gaps = 16/454 (4%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| |||||||| |||||||||||||| ||| | || |||||| ||||| Sbjct 2203347 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCAGCCAGAGAAATGTTCTCCATG 2203406 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA---TGG-GTGGCACC---CCAACTTGTTTGAG 122483 ||||| || || || | |||| | | || || || ||||| || Sbjct 2203407 AAGTCGAAGGGGTTGGTGGCGTGGTAGACCTTGACGTTGCCGAGGGCCAAC-------AG 2203459 Query 122484 GAGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAG 122543 ||||| || | || |||| ||||| | | |||| || |||||| |||| || Sbjct 2203460 CAGACGGTCAGCGACGAACTCGATGTATTGGCACATGAGAGTAGCGTTCATGCCGAGCAG 2203519 Query 122544 GTTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGAT 122603 ||||| |||||||| | |||| | | ||||||||| || || || | | ||| Sbjct 2203520 AGCGCATGGTAGTGCGTCGCTCAAGAACTCCTGCTCAATCTCGACGGCTTCAGTGATGAT 2203579 Query 122604 GGCGTGGATAGTTTCGGTAGTGGGTCTATTA-CGCAAAGTCTTGAAGAGCTCCACGGCAA 122662 || || || || | |||| | || || || |||||| ||| | Sbjct 2203580 AGCTCTGACAGACTCTGGGCTGGGCTTGTTCTCGAGGAGAGA-GAAGAGAAGGCAGGCGA 2203638 Query 122663 ACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCA 122722 | || ||| | ||||| || ||||| || || || || ||||| |||||| |||| Sbjct 2203639 AGTCGGTGTGCATGCCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCA 2203698 Query 122723 TGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 122782 | ||||| |||||||| | ||| | || | | ||| || ||| |||||||||||||| Sbjct 2203699 TCAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCT 2203758 Query 122783 CCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 | ||| || || |||| ||||| | |||||| Sbjct 2203759 CAACAGCGGCGAATGCAACGAGGCGGTTGGCGAA 2203792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031788039200