Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq21 237 2e-57 >seq21 Length=3333843 Score = 237 bits (262), Expect = 2e-57 Identities = 922/1434 (64%), Gaps = 35/1434 (2%) Strand=Plus/Plus Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202 |||||||| |||||||| |||||| || | |||||| |||| ||||||||| Sbjct 606881 TTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGTTGGAGGTGTATGGC 606940 Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262 || |||||||| ||||| |||| || || | |||||||| || ||||||||||| ||| Sbjct 606941 TCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTGGCATGGGTGCAATG 607000 Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAG 118322 || || ||| || | ||| | || ||| ||||| |||| ||||||| || Sbjct 607001 AGCAGCGAGTTGCGTACACCGTGCTCAGCAATCTTCTCCTTCAGAGACGCCCAGTCCCAG 607060 Query 118323 TTG--AGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCG 118380 | || | || | | | ||||||||| ||||||||||||| ||||| | || | Sbjct 607061 AGGTCAG-TAGGTGTGACATT-CCACATATCGTACTGGAGGATACCCTGGGATACGGGAG 607118 Query 118381 ATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGG 118440 |||| || | |||| || ||||| ||| || | ||| | | ||| | Sbjct 607119 ATCCTTCGTAGGTCTTGTAAGGGCCAAGTTCCTTTGCGATGTCGCATGAGGAAGTGAGAG 607178 Query 118441 CTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAA 118500 | || || || || || || || || | || | ||| || ||||| || || | Sbjct 607179 CAGCATGGTAGATGGTCTCGAAGATTTGGATGTTGAGCTTCTTAGCTTCGTCTGACTCGA 607238 Query 118501 ACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGC 118560 | | || ||| | || |||| || |||||||| ||||| | || || || | Sbjct 607239 AAGGAAGGCGGAGTGCGAGGAAGGCATCGGCAAGACCTTGAACACCCATACCGATGGGTC 607298 Query 118561 GATGTCTCATATTAGACTTC--CGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAAC 118618 | || | | || || | || || || || || || || ||||| | Sbjct 607299 GGTGGCGGAAGTT--GCTGCGGCGTGCCTCTTCGACAGGGTAGTGGTTGACCTCGATGAT 607356 Query 118619 CCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACT 118678 | | || | || |||||| |||| ||||| ||| || ||||| | | | ||||| Sbjct 607357 CTTGTTCAAGTTGCGGGTGACGACCTGTGTGACTTCGTGGAGCTTCTTGAAGTCAAACAC 607416 Query 118679 GCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGT 118738 || | || | | |||| | ||| ||||| | || |||| || || |||| | Sbjct 607417 GCCGGCCTTGTAGTCGACAAAAGAAGGCAGGGCAAGAGAAGCCAAGTTGCAAACAGCGAC 607476 Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 |||||| | | |||||||| | ||| || ||||||| ||| || || ||||| || Sbjct 607477 CTCATCAGGAGCGGTGTACTCCACAATCTCAGTGCACAGGTTGGAGCTGCGGATGGTACC 607536 Query 118799 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 118858 | |||||| || || ||| ||| || || |||||||| ||||| | || | || Sbjct 607537 GAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCTTGTAGAGCATAAAGGGGTTACC 607596 Query 118859 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTT 118918 ||||| || || | || || || || | ||| | | || | ||||| || Sbjct 607597 AGTCTCGGTCTGTGCCTCAAGGATGGCGTACCAAAGCTTTTGTGCGCGAACAGTCTCG-- 607654 Query 118919 GGCTCGCCCC----TCT--TCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCAC 118972 || ||| ||| | ||||| | ||| || ||||| || |||||||| Sbjct 607655 ----CGACCCTTGTTCTGCTTTTCGTAGCTCTCGTACAGAGCTTCGAATTCTTCACCGTA 607710 Query 118973 GGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTC 119032 | | || | ||| || || || | ||||| | || | ||| | || || | Sbjct 607711 GACATCGGCGAGGCCAGGGCACTCGTTCGGGCACATCAGTGTCCAGTTGCCGTTGTCTTG 607770 Query 119033 AACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGC 119092 || ||||||||||||||||| || ||||| || || |||||||||| ||| ||| | Sbjct 607771 GACACGCTTCATGAAGAGGTCAGGAATCCACAGAGCGTAGAAGAGATCGCGAGCGCGGAC 607830 Query 119093 TTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGG 119152 || || | || || || |||| || | || | | || || |||||||| || Sbjct 607831 CTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAACCAAAGACGTCAGCGTGCCATGG 607890 Query 119153 TTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCT 119206 || ||||| | |||| | | ||| |||| ||| |||||| ||||| | Sbjct 607891 CTCTAGGTAGATGGCGA-AGGCACCT--GGACGCTTGTTGCCACCCTGGTCGACATAGCG 607947 Query 119207 CGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CC 119265 |||||| ||| ||||||| ||||| ||||||| ||| | ||| || || || || Sbjct 607948 AGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCC 608007 Query 119266 CCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCC 119324 |||| || ||| | | | || | | ||| | || | |||||||| || || Sbjct 608008 ACCGATGTATGAGCC--AGTAGCACGAATGCGGTGCACGTTGAGGCCAATACCGCCAGCG 608065 Query 119325 CACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCC 119384 ||| ||||| ||| || | |||| || |||| || || ||||| ||| || Sbjct 608066 GTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATACTGTCCTCC 608125 Query 119385 TTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGA 119444 || | ||||||||||||| ||||||||| || ||||| || |||||||| | Sbjct 608126 TTCATGTCGATGAGGAAGCATGACGACATTTGCGGTGATGGTGTGCCCGCGTTGAACAAC 608185 Query 119445 GTTGGTGTCGCGTGGATGAACATAC-CTTGGGACATCTTGTCGTAGGTCTCCAAGACGGC 119503 || || | ||||| |||| ||| ||| ||||| | |||||||||||| | | | Sbjct 608186 GTCGGCGAGGCGTGTGTGAA-GTACTTTTGAGACATGTAGTCGTAGGTCTCGATGGCTTT 608244 Query 119504 GGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 119557 ||||| || |||||||| || | | || ||||| | ||||| ||| || Sbjct 608245 CTCGATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGG 608298 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||||||||||||||| || || ||||| ||||| ||||| ||||| |||||| Sbjct 2203653 CCCTCGTCACGGGAGATGAGCTCGTTGGAGAATGTTAGACCGGGCATCAGACCGCGCTTC 2203712 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || || ||||||||| ||||| ||| ||||| Sbjct 2203713 TTGAGCCAGAAGATGGAGGCGAAAGAACCGCTGAAGAAGATACCCTCAACAGCGGCGAAT 2203772 Query 130154 GCAAAGAGACG 130164 |||| ||| || Sbjct 2203773 GCAACGAGGCG 2203783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434991278120