Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq21 275 7e-69
>seq21
Length=3333843
Score = 275 bits (304), Expect = 7e-69
Identities = 1121/1743 (64%), Gaps = 39/1743 (2%)
Strand=Plus/Minus
Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280
|||||| ||||| ||||||| || || | || ||||| || || ||||| || |
Sbjct 608299 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATCGAGAAAGC 608240
Query 104281 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 104339
| | ||||| |||||| | ||||| ||| ||| |||| ||||| | || || | |
Sbjct 608239 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 608181
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| || || |||||| ||| |||||||| |||||||| |||| || |||||||
Sbjct 608180 TCAACGCGGGCACACCATCACCGCAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 608121
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|| ||| |||| || || | || || | | |||||| ||||| ||| ||||
Sbjct 608120 ACAGTATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 608061
Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 104517
| |||||||| | || | || | | || | | ||| || |||| || ||
Sbjct 608060 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGG--CTCATACATCGGTGGCAC 608003
Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577
|| || ||| | ||| | ||||| ||||| || |||| ||| ||| || |||||
Sbjct 608002 TAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 607943
Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631
||| | || | ||| ||||| | || | |||| |||| || ||||||||
Sbjct 607942 TGTCGACCAGGGTGGCAACAAGCGTCCA---GGTGCCTTCGCCATCTACCTAGAGCCATG 607886
Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CG 104689
|||||| || || | | |||||||| |||| ||||| || | ||||||| ||
Sbjct 607885 GCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG 607826
Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749
|| | ||||||||||||| |||||| |||||||| || |||||||||||| | || |
Sbjct 607825 CGCT--CGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAA 607768
Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809
|| | ||||| ||| | || | || || || || ||||| ||| |||||| |
Sbjct 607767 GACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTAC 607708
Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC-TGCGAC 104868
||||| || || ||||| || ||| | ||||| ||| || | | | | | |||
Sbjct 607707 GGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGA-AAAGCAGAACAAGGGTCGCGAGAC 607649
Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928
|| | || | | ||| | || || || || | || ||||||||||||| ||
Sbjct 607648 TGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCC 607589
Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988
| ||||| ||||| ||||| || |||| ||||| || || ||||| | ||| ||
Sbjct 607588 CTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCAT 607529
Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048
| || ||||| || || || || || |||| | || | |||||| |||||
Sbjct 607528 CCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGT 607469
Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 105107
|| ||| | || || | || || || | ||| || | || || | ||||
Sbjct 607468 TTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACA-AGGCCGGCGTGTTTG 607410
Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167
| | | || ||||||||||| || | |||||| ||| | |||| | || |
Sbjct 607409 ACTTCAAGAAGCTCCACGAAGTCACACAGGTCGTCACCCGCAACTTGAACAAGATCATCG 607350
Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227
| || ||||| || || || || || | | ||||| || || |
Sbjct 607349 AGGTCAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATCG 607290
Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287
|| | |||||||| ||||| || |||| ||| | |||| | || || || |
Sbjct 607289 GTATGGGTGTTCAAGGTCTTGCCGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCAG 607230
Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347
||||||| ||| | |||| | || || |||||||| || || || |||||
Sbjct 607229 ACGAAGCTAAGAAGCTCAACATCCAAATCTTCGAGACCATCTACCATGCTGCTCTCACTT 607170
Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407
| | || | ||| ||| ||| || || | |||| || || ||||| | |
Sbjct 607169 CCTCATGCGACATCGCAAAGGAACTTGGCCCTTACAAGACCTACGAAGGATCTCCCGTAT 607110
Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTG 105465
| || || | || || | ||||||| |||| || | ||| | || | || |||||
Sbjct 607109 CCCAGGGTATCCTCCAGTACGATATGT-GGAATGTCACACCTA-CTGACCTCTGGGACTG 607052
Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525
|| |||| ||||| || ||| | ||| | || ||| || ||||| || ||
Sbjct 607051 GGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGCAACTCGCTGCTCATTGCACC 606992
Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585
|||||||| |||||||| |||| || |||| || || || ||||| || || |||||
Sbjct 606991 CATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACAC 606932
Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT-- 105643
| ||||||||| | | |||||| || ||||| | |||||||| |||
Sbjct 606931 CTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAAC--CCATGG 606874
Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTG 105703
| | | ||||| || || ||||| ||||| || | |||||| | | || |
Sbjct 606873 TTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCATC 606814
Query 105704 AAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTAC 105763
| || ||||| ||| | ||| | || || | || | |||| | |||
Sbjct 606813 GCCGATGGAGGTTCTATTGCCAGGATTCCCAACATCCCTGAGGAGACAAAGACTCTTTAC 606754
Query 105764 CGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821
|| || ||||| ||| | |||||| ||||||| |||||||| || ||||||
Sbjct 606753 AAGACCGTCTGGGAGATCTCGCAGCGAAGGA--TCATTGAGATGGCCGCTGACCGTGGTG 606696
Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879
|||||||| | |||| ||| | || || |||| | || || ||| |||
Sbjct 606695 CTTTCATTGACC--AGTCTCAGTCGCTAAACATCCACATGAAGGAGCCTACTATGGGCAA 606638
Query 105880 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 105939
| || ||||||||||| | | |||||| ||||| || || || ||||| || ||
Sbjct 606637 GATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTGAAGACTGGCATGTACTATCT 606578
Query 105940 CCG 105942
|||
Sbjct 606577 CCG 606575
Score = 116 bits (128), Expect = 4e-21
Identities = 290/438 (66%), Gaps = 2/438 (0%)
Strand=Plus/Minus
Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866
|| ||| | ||||| || ||||||||||||||||||| ||||| ||| | | ||
Sbjct 2203783 CGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATC 2203724
Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926
| |||||||||||||| ||||| ||||| ||||| |||||||||||||| |||||
Sbjct 2203723 TTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCC 2203664
Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAA 94986
||||||||||| | ||| || || || || ||| | | | ||
Sbjct 2203663 CGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAG 2203604
Query 94987 CCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTC 95046
|| | | ||| || | |||| | | |||||||| ||||||||| | | |||
Sbjct 2203603 CCCAGCCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTC 2203544
Query 95047 ATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAATAT 95106
| || || || ||||||||||| |||| ||||| || |||| ||||
Sbjct 2203543 TTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATAC 2203484
Query 95107 ATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCA-ATTTGGAACTC 95165
|| |||| || |||| | || || | || || | || | | | || |
Sbjct 2203483 ATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTC-GGCAACGTCAAGGTCTACCACGC 2203425
Query 95166 CAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGA 95225
|| || || || |||||||||||||||||| || | || ||||| |||||||||||
Sbjct 2203424 CACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGA 2203365
Query 95226 AAAGAGGGTTGGGGACTA 95243
||| | || || |||||
Sbjct 2203364 GAAGCGCGTCGGCGACTA 2203347
Score = 84.2 bits (92), Expect = 3e-11
Identities = 218/326 (67%), Gaps = 21/326 (6%)
Strand=Plus/Plus
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
|| || ||||||||||| | | ||||| | |||| ||| || |||||||| |
Sbjct 942136 AATCCGTCCATCTCTGTTAGGATCTGGTTGAGAGTTGCTTCTCGCTCATCATTGCC---- 942191
Query 9674 ATACCACC--AGCACTGCGTTGCTTTCCCACGGCA-------TCAATCTCATCAATGAAG 9724
|||||| || |||| | | | |||||| ||||||||||||||||||
Sbjct 942192 --ACCACCGAAGTTCTGCTTCGATCGGGCACGGCCGATAGCGTCAATCTCATCAATGAAG 942249
Query 9725 ACGATGCATGGT-TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 9783
| |||||| || || | || ||| || | || | || || |||||| || ||
Sbjct 942250 ATGATGCAGGGCGTGCTCTT-GCGCGCATTGGCGAACAAGTCTCGGACACGCGATGCACC 942308
Query 9784 CACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAACATTGGATGAAGGGGACATTA 9841
|||||||| |||||||| || || | | | | || || || | ||| || ||
Sbjct 942309 AACACCAACGAACATCTCGACGAACTCAGAACCACTGA-CACTGAA-GAAAGGAACGCCT 942366
Query 9842 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 9901
|| || |||||| | || ||| |||||||||||||| |||||||| || | |||
Sbjct 942367 GACTCTCCCGCAGTAGCCTTGGCAAGAAGAGTCTTACCAGTACCTGGGGATCCAGATAGG 942426
Query 9902 AGGGCACCTCGTGGAATCTTGGCGCC 9927
| ||||| || || ||||| || ||
Sbjct 942427 ATAGCACCGCGAGGGATCTTCGCACC 942452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260603149480
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