Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq21 275 7e-69 >seq21 Length=3333843 Score = 275 bits (304), Expect = 7e-69 Identities = 1121/1743 (64%), Gaps = 39/1743 (2%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| ||||| ||||||| || || | || ||||| || || ||||| || | Sbjct 608299 CCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATCGAGAAAGC 608240 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| |||||| | ||||| ||| ||| |||| ||||| | || || | | Sbjct 608239 CATCGAGACCTACGACTACATGTCTCAAAAGTAC-TTCACACACGCCTCGCCGACGTTGT 608181 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || |||||| ||| |||||||| |||||||| |||| || ||||||| Sbjct 608180 TCAACGCGGGCACACCATCACCGCAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGG 608121 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| |||| || || | || || | | |||||| ||||| ||| |||| Sbjct 608120 ACAGTATCGACGGCATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTG 608061 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-AC 104517 | |||||||| | || | || | | || | | ||| || |||| || || Sbjct 608060 GCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGG--CTCATACATCGGTGGCAC 608003 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 || || ||| | ||| | ||||| ||||| || |||| ||| ||| || ||||| Sbjct 608002 TAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTA 607943 Query 104578 TGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATG 104631 ||| | || | ||| ||||| | || | |||| |||| || |||||||| Sbjct 607942 TGTCGACCAGGGTGGCAACAAGCGTCCA---GGTGCCTTCGCCATCTACCTAGAGCCATG 607886 Query 104632 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CG 104689 |||||| || || | | |||||||| |||| ||||| || | ||||||| || Sbjct 607885 GCACGCTGACGTCTTTGGTTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCG 607826 Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749 || | ||||||||||||| |||||| |||||||| || |||||||||||| | || | Sbjct 607825 CGCT--CGCGATCTCTTCTACGCTCTGTGGATTCCTGACCTCTTCATGAAGCGTGTCCAA 607768 Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809 || | ||||| ||| | || | || || || || ||||| ||| |||||| | Sbjct 607767 GACAACGGCAACTGGACACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTAC 607708 Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGAC-TGCGAC 104868 ||||| || || ||||| || ||| | ||||| ||| || | | | | | ||| Sbjct 607707 GGTGAAGAATTCGAAGCTCTGTACGAGAGCTACGA-AAAGCAGAACAAGGGTCGCGAGAC 607649 Query 104869 GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 104928 || | || | | ||| | || || || || | || ||||||||||||| || Sbjct 607648 TGTTCGCGCACAAAAGCTTTGGTACGCCATCCTTGAGGCACAGACCGAGACTGGTAACCC 607589 Query 104929 ATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 104988 | ||||| ||||| ||||| || |||| ||||| || || ||||| | ||| || Sbjct 607588 CTTTATGCTCTACAAGGACGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCAT 607529 Query 104989 CAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 105048 | || ||||| || || || || || |||| | || | |||||| ||||| Sbjct 607528 CCGCAGCTCCAACCTGTGCACTGAGATTGTGGAGTACACCGCTCCTGATGAGGTCGCTGT 607469 Query 105049 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 105107 || ||| | || || | || || || | ||| || | || || | |||| Sbjct 607468 TTGCAACTTGGCTTCTCTTGCCCTGCCTTCTTTTGTCGACTACA-AGGCCGGCGTGTTTG 607410 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | || ||||||||||| || | |||||| ||| | |||| | || | Sbjct 607409 ACTTCAAGAAGCTCCACGAAGTCACACAGGTCGTCACCCGCAACTTGAACAAGATCATCG 607350 Query 105168 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | || ||||| || || || || || | | ||||| || || | Sbjct 607349 AGGTCAACCACTACCCTGTCGAAGAGGCACGCCGCAGCAACTTCCGCCACCGACCCATCG 607290 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 || | |||||||| ||||| || |||| ||| | |||| | || || || | Sbjct 607289 GTATGGGTGTTCAAGGTCTTGCCGATGCCTTCCTCGCACTCCGCCTTCCTTTCGAGTCAG 607230 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||||||| ||| | |||| | || || |||||||| || || || ||||| Sbjct 607229 ACGAAGCTAAGAAGCTCAACATCCAAATCTTCGAGACCATCTACCATGCTGCTCTCACTT 607170 Query 105348 CGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTT 105407 | | || | ||| ||| ||| || || | |||| || || ||||| | | Sbjct 607169 CCTCATGCGACATCGCAAAGGAACTTGGCCCTTACAAGACCTACGAAGGATCTCCCGTAT 607110 Query 105408 CACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT--TCACTACGACTG 105465 | || || | || || | ||||||| |||| || | ||| | || | || ||||| Sbjct 607109 CCCAGGGTATCCTCCAGTACGATATGT-GGAATGTCACACCTA-CTGACCTCTGGGACTG 607052 Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 || |||| ||||| || ||| | ||| | || ||| || ||||| || || Sbjct 607051 GGCGTCTCTGAAGGAGAAGATTGCTGAGCACGGTGTACGCAACTCGCTGCTCATTGCACC 606992 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 |||||||| |||||||| |||| || |||| || || || ||||| || || ||||| Sbjct 606991 CATGCCAACTGCCTCCACTTCACAGATTCTGGGCAACAACGAGTGCTTCGAGCCATACAC 606932 Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT-- 105643 | ||||||||| | | |||||| || ||||| | |||||||| ||| Sbjct 606931 CTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTGAGTTCCAGGTTGTCAAC--CCATGG 606874 Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTG 105703 | | | ||||| || || ||||| ||||| || | |||||| | | || | Sbjct 606873 TTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGAGAACATGAAGAACCGTATCATC 606814 Query 105704 AAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTAC 105763 | || ||||| ||| | ||| | || || | || | |||| | ||| Sbjct 606813 GCCGATGGAGGTTCTATTGCCAGGATTCCCAACATCCCTGAGGAGACAAAGACTCTTTAC 606754 Query 105764 CGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || || ||||| ||| | |||||| ||||||| |||||||| || |||||| Sbjct 606753 AAGACCGTCTGGGAGATCTCGCAGCGAAGGA--TCATTGAGATGGCCGCTGACCGTGGTG 606696 Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879 |||||||| | |||| ||| | || || |||| | || || ||| ||| Sbjct 606695 CTTTCATTGACC--AGTCTCAGTCGCTAAACATCCACATGAAGGAGCCTACTATGGGCAA 606638 Query 105880 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 105939 | || ||||||||||| | | |||||| ||||| || || || ||||| || || Sbjct 606637 GATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCTGAAGACTGGCATGTACTATCT 606578 Query 105940 CCG 105942 ||| Sbjct 606577 CCG 606575 Score = 116 bits (128), Expect = 4e-21 Identities = 290/438 (66%), Gaps = 2/438 (0%) Strand=Plus/Minus Query 94807 CGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATT 94866 || ||| | ||||| || ||||||||||||||||||| ||||| ||| | | || Sbjct 2203783 CGCCTCGTTGCATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATC 2203724 Query 94867 TATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCT 94926 | |||||||||||||| ||||| ||||| ||||| |||||||||||||| ||||| Sbjct 2203723 TTCTGGCTCAAGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCC 2203664 Query 94927 CGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTATTGCGTATTAAA 94986 ||||||||||| | ||| || || || || ||| | | | || Sbjct 2203663 CGTGACGAGGGCATGCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAG 2203604 Query 94987 CCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAAGGATTC 95046 || | | ||| || | |||| | | |||||||| ||||||||| | | ||| Sbjct 2203603 CCCAGCCCAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTC 2203544 Query 95047 ATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATGTCTGAATAT 95106 | || || || ||||||||||| |||| ||||| || |||| |||| Sbjct 2203543 TTGAGCGACGCACTACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATAC 2203484 Query 95107 ATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTCCA-ATTTGGAACTC 95165 || |||| || |||| | || || | || || | || | | | || | Sbjct 2203483 ATCGAGTTCGTCGCTGACCGTCTGCTGTTGGCCCTC-GGCAACGTCAAGGTCTACCACGC 2203425 Query 95166 CAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGA 95225 || || || || |||||||||||||||||| || | || ||||| ||||||||||| Sbjct 2203424 CACCAACCCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGA 2203365 Query 95226 AAAGAGGGTTGGGGACTA 95243 ||| | || || ||||| Sbjct 2203364 GAAGCGCGTCGGCGACTA 2203347 Score = 84.2 bits (92), Expect = 3e-11 Identities = 218/326 (67%), Gaps = 21/326 (6%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || || ||||||||||| | | ||||| | |||| ||| || |||||||| | Sbjct 942136 AATCCGTCCATCTCTGTTAGGATCTGGTTGAGAGTTGCTTCTCGCTCATCATTGCC---- 942191 Query 9674 ATACCACC--AGCACTGCGTTGCTTTCCCACGGCA-------TCAATCTCATCAATGAAG 9724 |||||| || |||| | | | |||||| |||||||||||||||||| Sbjct 942192 --ACCACCGAAGTTCTGCTTCGATCGGGCACGGCCGATAGCGTCAATCTCATCAATGAAG 942249 Query 9725 ACGATGCATGGT-TGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCC 9783 | |||||| || || | || ||| || | || | || || |||||| || || Sbjct 942250 ATGATGCAGGGCGTGCTCTT-GCGCGCATTGGCGAACAAGTCTCGGACACGCGATGCACC 942308 Query 9784 CACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAACATTGGATGAAGGGGACATTA 9841 |||||||| |||||||| || || | | | | || || || | ||| || || Sbjct 942309 AACACCAACGAACATCTCGACGAACTCAGAACCACTGA-CACTGAA-GAAAGGAACGCCT 942366 Query 9842 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 9901 || || |||||| | || ||| |||||||||||||| |||||||| || | ||| Sbjct 942367 GACTCTCCCGCAGTAGCCTTGGCAAGAAGAGTCTTACCAGTACCTGGGGATCCAGATAGG 942426 Query 9902 AGGGCACCTCGTGGAATCTTGGCGCC 9927 | ||||| || || ||||| || || Sbjct 942427 ATAGCACCGCGAGGGATCTTCGCACC 942452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260603149480