Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq21 246 3e-60 seq23 107 2e-18 >seq21 Length=3333843 Score = 246 bits (272), Expect = 3e-60 Identities = 419/595 (70%), Gaps = 12/595 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || | || || |||||||| ||| | | | | ||||| |||| Sbjct 608285 TCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATCGAGAAAGCCATCGAGACCTACG 608226 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| ||||||||||| || |||||| |||| || |||||||||| || || Sbjct 608225 ACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAACGCGGGCACAC 608166 Query 53313 -ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 |||||| || |||||| |||||||| | | |||||||| ||| ||||||||| Sbjct 608165 CATCACCG-CAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAGTATCGACGGC 608107 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || ||||| || |||||| ||||| ||||||||| | || ||||| || || Sbjct 608106 ATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGGTATTGGCCTC 608047 Query 53432 CAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || ||| | | | ||||| | ||| || ||| || || ||||| | | Sbjct 608046 AACGTGCACCG-CATTCGTGCTACTGGCTCATACATCGGTGGCACTAACGGAACATCTAA 607988 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || || | || |||||||| || | ||||||||| || || || ||| |||||||||| Sbjct 607987 CGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCGACCAGGGTGG 607928 Query 53551 TGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 ||||| | ||| | | |||||||||||||| ||||| |||||||| ||| | | | Sbjct 607927 CAACAAGCGTCCAGGTGCC-TTCGCCATCTACCTAGAGCCATGGCACGCTGACGTCTTTG 607869 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-T 53668 || || || ||||| ||| || || | || ||| | ||| || || || || | Sbjct 607868 GTTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGATCTCTTCT 607809 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGGAGTGGT 53726 || |||||||||||||| |||||||||||| || ||| ||| ||| | ||| Sbjct 607808 AC-GCTCTGTGGATTCCTGACCTCTTCATG--AAGCGTGTCCAAGACAACGGCAACTGGA 607752 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 ||||||||||||||||||||||| |||||| | |||||||||||| || || Sbjct 607751 CACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAATT 607697 Score = 120 bits (132), Expect = 3e-22 Identities = 300/448 (67%), Gaps = 7/448 (2%) Strand=Plus/Minus Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 |||||||||| |||||| | || || |||||||| || || || | ||||| |||||| Sbjct 607016 TACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCA 606957 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601 |||||||| |||||||| ||||| |||||||||| ||||| ||| || |||| Sbjct 606956 ACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTG 606897 Query 55602 AGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACC 55661 |||| | ||||| | |||||||||| | || |||| Sbjct 606896 AGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTG 606837 Query 55662 CGCAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGT--CCAGAAT-CTGGAGATT 55717 | | || |||| ||| | || || || || || | |||| || | | || Sbjct 606836 AGAACATGAAGAACCGTATCATCGCCGAT-GGAGGTTCTATTGCCAGGATTCCCAACATC 606778 Query 55718 CCTCTGCGTCTCAAGGAGA-TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGAT 55776 ||| | | ||| || ||||| ||| || |||||||| | ||| || | || Sbjct 606777 CCTGAG-GAGACAAAGACTCTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGGATCAT 606719 Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836 ||| ||| ||||| |||||||| | ||| |||||||| ||||| || |||||| ||| Sbjct 606718 TGAGATGGCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAGTCGCTAAACATCCACAT 606659 Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 | || | ||| | ||| |||| | | || ||||||||| || |||||| || || Sbjct 606658 GAAGGAGCCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCT 606599 Query 55897 CAAGACGGGTATGTACTATCTGCGGACC 55924 ||||| || ||||||||||| || ||| Sbjct 606598 GAAGACTGGCATGTACTATCTCCGTACC 606571 >seq23 Length=2828041 Score = 107 bits (118), Expect = 2e-18 Identities = 137/189 (72%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 119002 CTTGCTCATGTTGTCGGTCCAAGATTGCATGTAGATCTTCTTACC------ATCACTAAT 119055 ||||||||||||||||||||||| |||| |||| ||||||| ||| | Sbjct 440733 CTTGCTCATGTTGTCGGTCCAAGTTTGCTTGTACTTCTTCTTCTGCTTCGAATCGACCGT 440674 Query 119056 TTTGATGTTAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACC 119115 | || |||||| | |||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 440673 CTCGACCGTAAATTCGGTACTGAAAACGTTACAAAGCTTTGCTCCGTAACCGTTGCGACC 440614 Query 119116 ACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175 |||||| || ||||| | ||||| |||||||||| || | |||||| |||||||| Sbjct 440613 ACCGGTGACCTTCTGCTGGTTGTCGTCGTAGTTGGAGGATGTGAGAAGGTGACCAAAGAT 440554 Query 119176 GAGCTCGGG 119184 | ||| || Sbjct 440553 CATCTCTGG 440545 Score = 93.3 bits (102), Expect = 5e-14 Identities = 195/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358 ||||| ||| |||| || | | ||| |||||||| ||||| ||||||| |||| Sbjct 442550 AGGCGTGTGTAAATATACCTGGCGCTGGCAGCATCGGCACCACCCTTGAGACGCGAACCG 442491 Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418 || | ||||| || || | | ||| | |||||||| || |||||||| || || | | Sbjct 442490 AAGTTACCACTGGGTTCGAGGTAGTTGATGTTGTTGGTACCGACAAAGTTCTGCGCAAGG 442431 Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCC-AC 117477 |||||||| || ||||| | || ||||| || ||| | || | |||| || Sbjct 442430 TTGACAATAGTTCCTTGCATAGAAGCTTCACCGTGAGCATAGTCGGTG-GATCCGGAGAC 442372 Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537 | | || || |||| | | ||||| | ||| | | | ||| | ||| |||| || Sbjct 442371 GGAACCAGCAAGCTCAACGACCTTGACATCTTTCTTGATGTTTCGCCTGAAACAGGTGTA 442312 Query 117538 AATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGA 117584 | ||||| || |||| ||||||||||| || | ||| |||||| Sbjct 442311 CAGAACCTTTCGTTGACCGGGCTTCAGACCGTCGACAACG-GAGGGA 442266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215815314600