Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq21 246 3e-60
seq23 107 2e-18
>seq21
Length=3333843
Score = 246 bits (272), Expect = 3e-60
Identities = 419/595 (70%), Gaps = 12/595 (2%)
Strand=Plus/Minus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| || || | || || |||||||| ||| | | | | ||||| ||||
Sbjct 608285 TCATGCGTGTTGCTGTTGGCATTCACGGTGATGACATCGAGAAAGCCATCGAGACCTACG 608226
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
||| ||| ||||||||||| || |||||| |||| || |||||||||| || ||
Sbjct 608225 ACTACATGTCTCAAAAGTACTTCACACACGCCTCGCCGACGTTGTTCAACGCGGGCACAC 608166
Query 53313 -ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371
|||||| || |||||| |||||||| | | |||||||| ||| |||||||||
Sbjct 608165 CATCACCG-CAAATGTCGTCATGCTTCCTCATCGACATGAAGGAGGACAGTATCGACGGC 608107
Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431
|| ||||| || |||||| ||||| ||||||||| | || ||||| || ||
Sbjct 608106 ATTTACGACACACTCAAGACCTGTGCGTTGATCTCCAAGACCGCTGGCGGTATTGGCCTC 608047
Query 53432 CAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490
|| ||| | | | ||||| | ||| || ||| || || ||||| | |
Sbjct 608046 AACGTGCACCG-CATTCGTGCTACTGGCTCATACATCGGTGGCACTAACGGAACATCTAA 607988
Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550
|| || | || |||||||| || | ||||||||| || || || ||| ||||||||||
Sbjct 607987 CGGTCTCATTCCCATGCTCCGTGTATACAACAACACTGCTCGCTATGTCGACCAGGGTGG 607928
Query 53551 TGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609
||||| | ||| | | |||||||||||||| ||||| |||||||| ||| | | |
Sbjct 607927 CAACAAGCGTCCAGGTGCC-TTCGCCATCTACCTAGAGCCATGGCACGCTGACGTCTTTG 607869
Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-T 53668
|| || || ||||| ||| || || | || ||| | ||| || || || || |
Sbjct 607868 GTTTCCTTGACCTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGCGATCTCTTCT 607809
Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGGAGTGGT 53726
|| |||||||||||||| |||||||||||| || ||| ||| ||| | |||
Sbjct 607808 AC-GCTCTGTGGATTCCTGACCTCTTCATG--AAGCGTGTCCAAGACAACGGCAACTGGA 607752
Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781
||||||||||||||||||||||| |||||| | |||||||||||| || ||
Sbjct 607751 CACTGATGTGCCCGAACGAGTGCCCTGGCCTCGCCGATGTCTACGGTGAAGAATT 607697
Score = 120 bits (132), Expect = 3e-22
Identities = 300/448 (67%), Gaps = 7/448 (2%)
Strand=Plus/Minus
Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541
|||||||||| |||||| | || || |||||||| || || || | ||||| ||||||
Sbjct 607016 TACGCAACTCGCTGCTCATTGCACCCATGCCAACTGCCTCCACTTCACAGATTCTGGGCA 606957
Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601
|||||||| |||||||| ||||| |||||||||| ||||| ||| || ||||
Sbjct 606956 ACAACGAGTGCTTCGAGCCATACACCTCCAACATCTATTCCCGCCGTGTCCTCGCTGGTG 606897
Query 55602 AGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACC 55661
|||| | ||||| | |||||||||| | || ||||
Sbjct 606896 AGTTCCAGGTTGTCAACCCATGGTTGCTCAAGGACCTTGTCGACATGGGTCTGTGGTCTG 606837
Query 55662 CGCAGATCAAGACGGATATTGT-GCGGAACGGGGGGTCCGT--CCAGAAT-CTGGAGATT 55717
| | || |||| ||| | || || || || || | |||| || | | ||
Sbjct 606836 AGAACATGAAGAACCGTATCATCGCCGAT-GGAGGTTCTATTGCCAGGATTCCCAACATC 606778
Query 55718 CCTCTGCGTCTCAAGGAGA-TTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGAT 55776
||| | | ||| || ||||| ||| || |||||||| | ||| || | ||
Sbjct 606777 CCTGAG-GAGACAAAGACTCTTTACAAGACCGTCTGGGAGATCTCGCAGCGAAGGATCAT 606719
Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836
||| ||| ||||| |||||||| | ||| |||||||| ||||| || |||||| |||
Sbjct 606718 TGAGATGGCCGCTGACCGTGGTGCTTTCATTGACCAGTCTCAGTCGCTAAACATCCACAT 606659
Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896
| || | ||| | ||| |||| | | || ||||||||| || |||||| || ||
Sbjct 606658 GAAGGAGCCTACTATGGGCAAGATCACTTCTATGCACTTTGCTGGCTGGAAGGCTGGTCT 606599
Query 55897 CAAGACGGGTATGTACTATCTGCGGACC 55924
||||| || ||||||||||| || |||
Sbjct 606598 GAAGACTGGCATGTACTATCTCCGTACC 606571
>seq23
Length=2828041
Score = 107 bits (118), Expect = 2e-18
Identities = 137/189 (72%), Gaps = 6/189 (3%)
Strand=Plus/Minus
Query 119002 CTTGCTCATGTTGTCGGTCCAAGATTGCATGTAGATCTTCTTACC------ATCACTAAT 119055
||||||||||||||||||||||| |||| |||| ||||||| ||| |
Sbjct 440733 CTTGCTCATGTTGTCGGTCCAAGTTTGCTTGTACTTCTTCTTCTGCTTCGAATCGACCGT 440674
Query 119056 TTTGATGTTAAATTTCGAACTGAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACC 119115
| || |||||| | |||||| ||||| ||||| || ||||| ||||| |||||
Sbjct 440673 CTCGACCGTAAATTCGGTACTGAAAACGTTACAAAGCTTTGCTCCGTAACCGTTGCGACC 440614
Query 119116 ACCGGTCACGCGCTGCTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGAT 119175
|||||| || ||||| | ||||| |||||||||| || | |||||| ||||||||
Sbjct 440613 ACCGGTGACCTTCTGCTGGTTGTCGTCGTAGTTGGAGGATGTGAGAAGGTGACCAAAGAT 440554
Query 119176 GAGCTCGGG 119184
| ||| ||
Sbjct 440553 CATCTCTGG 440545
Score = 93.3 bits (102), Expect = 5e-14
Identities = 195/287 (68%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358
||||| ||| |||| || | | ||| |||||||| ||||| ||||||| ||||
Sbjct 442550 AGGCGTGTGTAAATATACCTGGCGCTGGCAGCATCGGCACCACCCTTGAGACGCGAACCG 442491
Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418
|| | ||||| || || | | ||| | |||||||| || |||||||| || || | |
Sbjct 442490 AAGTTACCACTGGGTTCGAGGTAGTTGATGTTGTTGGTACCGACAAAGTTCTGCGCAAGG 442431
Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCC-AC 117477
|||||||| || ||||| | || ||||| || ||| | || | |||| ||
Sbjct 442430 TTGACAATAGTTCCTTGCATAGAAGCTTCACCGTGAGCATAGTCGGTG-GATCCGGAGAC 442372
Query 117478 GTAGCCCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATA 117537
| | || || |||| | | ||||| | ||| | | | ||| | ||| |||| ||
Sbjct 442371 GGAACCAGCAAGCTCAACGACCTTGACATCTTTCTTGATGTTTCGCCTGAAACAGGTGTA 442312
Query 117538 AATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGA 117584
| ||||| || |||| ||||||||||| || | ||| ||||||
Sbjct 442311 CAGAACCTTTCGTTGACCGGGCTTCAGACCGTCGACAACG-GAGGGA 442266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215815314600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |