Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 >seq1 Length=3968015 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/237 (69%), Gaps = 5/237 (2%) Strand=Plus/Plus Query 30223 CATGTCCGT-GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 ||||||| | |||||| || || ||||||| ||||||||| ||||| || || ||||| | Sbjct 260656 CATGTCCCTTGTACTCCGCGCCAAAATGCCGCCACTGGAAACCGTATACTGGACCCAGCT 260715 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 | || || || ||| | | |||| |||||| | | || | |||||| ||| Sbjct 260716 CGCCTTCCTCGTAGTGGTTTAGGCCCACCTTGTCGAGGTACTCCCGACTGCCGTTGCCGT 260775 Query 30342 CCCAGATCTT--TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30399 |||||||||| |||| | || |||||| ||| || |||| ||| ||| || Sbjct 260776 CCCAGATCTTGATACCAGCGTCCGAGAGAG--ACTTGCTGTGTGTGCTGCCTGCGACAAA 260833 Query 30400 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 ||| |||| ||| | | ||||| ||| || || || || ||||||||||| Sbjct 260834 CCATAGCAACTCGCCAATTACGGCACGAGTAAATACTCTTTTTGTTGTGAGGAGGGG 260890 Score = 86.0 bits (94), Expect = 5e-12 Identities = 202/303 (67%), Gaps = 3/303 (1%) Strand=Plus/Plus Query 29737 CATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTT 29796 |||| |||| ||| |||| ||| || | ||| ||| | ||| ||||| || || Sbjct 260135 CATCTTCATGGATATAGCGGCATGTGGTTTGTACCCCAGGACCTCGAATTCCTCGGCTTT 260194 Query 29797 AAAGTCGTCCAGGCT--CTCCACCCTC-CTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29853 | | || | ||| | ||| ||| | ||| ||| | ||||| || || || || Sbjct 260195 CCAACCATCGATGCTGCCCCCAATCTCTCGGTTGATCTTGAGTGTAGGGAACTCTCGCGG 260254 Query 29854 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCC 29913 || | ||| ||||| |||||||| || | || || | ||| ||||| ||||| || Sbjct 260255 TTCGCGCTCCAGCTGCACCTTCAGCGCATCTATGTGGTCGATGTATACGTGTGCGTCGCC 260314 Query 29914 CAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 29973 || | || ||| || || ||| || || ||||| | ||||| ||||| Sbjct 260315 CATTGTATGTGTAAATGTACCGGGCGTTAGGTCGCACACATGAGCTAGCATGTGAGTGAG 260374 Query 29974 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 30033 || | |||| ||||||||| || ||||| ||||| ||||| || | || |||||||| Sbjct 260375 AAGCGCGTAGGAGGCGATGTTGAAAGGTACACCGAGACCCATATCGCAGGATCTCTGGTA 260434 Query 30034 GAG 30036 ||| Sbjct 260435 GAG 260437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310266298484