Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq1 89.7 4e-13
>seq1
Length=3968015
Score = 89.7 bits (98), Expect = 4e-13
Identities = 164/237 (69%), Gaps = 5/237 (2%)
Strand=Plus/Plus
Query 30223 CATGTCCGT-GTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281
||||||| | |||||| || || ||||||| ||||||||| ||||| || || ||||| |
Sbjct 260656 CATGTCCCTTGTACTCCGCGCCAAAATGCCGCCACTGGAAACCGTATACTGGACCCAGCT 260715
Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341
| || || || ||| | | |||| |||||| | | || | |||||| |||
Sbjct 260716 CGCCTTCCTCGTAGTGGTTTAGGCCCACCTTGTCGAGGTACTCCCGACTGCCGTTGCCGT 260775
Query 30342 CCCAGATCTT--TACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAA 30399
|||||||||| |||| | || |||||| ||| || |||| ||| ||| ||
Sbjct 260776 CCCAGATCTTGATACCAGCGTCCGAGAGAG--ACTTGCTGTGTGTGCTGCCTGCGACAAA 260833
Query 30400 CCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456
||| |||| ||| | | ||||| ||| || || || || |||||||||||
Sbjct 260834 CCATAGCAACTCGCCAATTACGGCACGAGTAAATACTCTTTTTGTTGTGAGGAGGGG 260890
Score = 86.0 bits (94), Expect = 5e-12
Identities = 202/303 (67%), Gaps = 3/303 (1%)
Strand=Plus/Plus
Query 29737 CATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTT 29796
|||| |||| ||| |||| ||| || | ||| ||| | ||| ||||| || ||
Sbjct 260135 CATCTTCATGGATATAGCGGCATGTGGTTTGTACCCCAGGACCTCGAATTCCTCGGCTTT 260194
Query 29797 AAAGTCGTCCAGGCT--CTCCACCCTC-CTGTTTATCCTCAGTGTGGGAAAGGGTCTGGG 29853
| | || | ||| | ||| ||| | ||| ||| | ||||| || || || ||
Sbjct 260195 CCAACCATCGATGCTGCCCCCAATCTCTCGGTTGATCTTGAGTGTAGGGAACTCTCGCGG 260254
Query 29854 CTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCC 29913
|| | ||| ||||| |||||||| || | || || | ||| ||||| ||||| ||
Sbjct 260255 TTCGCGCTCCAGCTGCACCTTCAGCGCATCTATGTGGTCGATGTATACGTGTGCGTCGCC 260314
Query 29914 CAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAG 29973
|| | || ||| || || ||| || || ||||| | ||||| |||||
Sbjct 260315 CATTGTATGTGTAAATGTACCGGGCGTTAGGTCGCACACATGAGCTAGCATGTGAGTGAG 260374
Query 29974 GAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 30033
|| | |||| ||||||||| || ||||| ||||| ||||| || | || ||||||||
Sbjct 260375 AAGCGCGTAGGAGGCGATGTTGAAAGGTACACCGAGACCCATATCGCAGGATCTCTGGTA 260434
Query 30034 GAG 30036
|||
Sbjct 260435 GAG 260437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406310266298484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |