Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq23 118 7e-22
seq12 87.8 1e-12
seq26 84.2 1e-11
>seq23
Length=2828041
Score = 118 bits (130), Expect = 7e-22
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | |||||| | |||||| |||||||| |||||| || ||||| || |||||
Sbjct 925949 CCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAG 925890
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| ||||||| || || ||||| || || || | |||||| ||||| || ||
Sbjct 925889 AGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGG 925830
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT---CTCC 34656
| ||||||||||| |||||| |||| || ||| ||||| |||
Sbjct 925829 ATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTG---TCGCTAGACTCG 925773
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||||| || || || || ||||| | || || ||||| ||||||||
Sbjct 925772 ACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 925723
Score = 102 bits (112), Expect = 5e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || || ||| ||||||||| ||||| || || || || || ||
Sbjct 925712 AGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGG 925653
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| | || || ||||| || || | ||||||||||||||| || | ||||||
Sbjct 925652 CCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCC 925593
Query 34609 TTGTCTGTGATCTT 34622
|||||| ||||||
Sbjct 925592 TTGTCTTGGATCTT 925579
>seq12
Length=3815900
Score = 87.8 bits (96), Expect = 1e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | ||||| ||||| ||| |||||| || ||||| || || |||
Sbjct 2951385 CCACCACGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 2951444
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | || || || || || ||||| || || | |||||| |||||||| ||
Sbjct 2951445 AGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 2951504
Query 34600 ACTCCCTCCTTGTCTG 34615
| |||||||||||||
Sbjct 2951505 ATGCCCTCCTTGTCTG 2951520
>seq26
Length=2547288
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| ||||| || |||||| || ||||| || || || || || ||
Sbjct 1485400 AGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 1485459
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || ||||| || ||||| || || | |||||||||||||| || | ||||||
Sbjct 1485460 CCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGAATGCCCTCC 1485519
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 1485520 TTGTCCTGGATCTT 1485533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729496434291
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |