Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq23 127 2e-24 >seq23 Length=2828041 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| |||||| | || || || || |||||| | | Sbjct 925495 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 925554 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| || || || || || || ||| Sbjct 925555 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 925614 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || ||||||||| | || | ||||| |||||| Sbjct 925615 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 925674 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | || ||||| | ||| | || ||||| || Sbjct 925675 ATCCAAAAGGAGTCCACACTTCACTTGGTGCTTCGTCTCCGTGGTGGTAT 925724 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||||||| | || |||||||| || || | |||||| | || || | ||||| Sbjct 925289 TGACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGT 925348 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 ||| || |||||||| || ||||| || || ||||| || || | || | |||||| | Sbjct 925349 CAAAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAA 925408 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTAC 27189 | ||| | || ||| | ||| | ||||| ||||||||||| |||||||| || | | Sbjct 925409 AGCAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGC 925468 Query 27190 ATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | | || | || |||| ||||| || Sbjct 925469 ACCTTGTCCTCCGCCTGCGCGGTGGTAT 925496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918253215040