Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq23 95.1 1e-14
>seq23
Length=2828041
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || ||| ||| ||||| || || || |||| || || || |||| ||
Sbjct 925704 CACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTC 925645
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
| ||| || || || || || |||||||| ||||| | || | | ||| |||||
Sbjct 925644 CAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTG 925585
Query 39195 GATTTTCTGTTTGAGCGTCGCCACC-GTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253
||| ||| |||| ||| | || || ||||| || ||||| || | |||||| | |
Sbjct 925584 GATCTTCGACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCT 925526
Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || ||||| || || || |||||||||||
Sbjct 925525 TGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Minus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
|||||| || || || ||| || || || || || || | || ||||| |||| ||
Sbjct 925932 CACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTC 925873
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||| || || || || || |||||||||||||| | || | | ||| ||||||
Sbjct 925872 CAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTG 925813
Query 39195 GATTTT---CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251
||| || || || | |||| | ||| ||||| ||||| || |||| || || |
Sbjct 925812 GATCTTGGACT-TTACATTGTCG--ATCGTGTCGCTAGACTCGACTTCCAATGTAATGGT 925756
Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
||||| || || || || |||||||| |||||
Sbjct 925755 CTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 925723
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429545458652651
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |