Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq23 100 7e-16
>seq23
Length=2828041
Score = 100 bits (110), Expect = 7e-16
Identities = 138/191 (72%), Gaps = 4/191 (2%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||||||||| || || || ||||| || || |||||||| |||| | || | || ||
Sbjct 925479 GAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTC 925420
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009
|| || ||||| |||||||||||||| | ||||| |||| | ||| || |||||
Sbjct 925419 CTCGAGTTGCTTT--CCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTG 925362
Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069
||||| || ||| ||||| | || | | |||| || ||| || |||||||| ||
Sbjct 925361 TCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATG 925302
Query 152070 GTTTTGCCCGT 152080
|| ||||| ||
Sbjct 925301 GTCTTGCCGGT 925291
Score = 93.3 bits (102), Expect = 1e-13
Identities = 151/213 (71%), Gaps = 11/213 (5%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||| || ||||| |||||||||||||| |||| | ||| | || ||||| |
Sbjct 925701 CAAG-TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCA 925643
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
||||| ||||||||||| || | ||| ||||||| | || || ||||| |||||
Sbjct 925642 ACTGCTTT--CCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTG 925585
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || ||||| | || | |||| ||| || || || || || || ||
Sbjct 925584 GATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGA---TTCCACCTCGAGCGTGATGGT 925528
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || ||||| ||||||| |||||
Sbjct 925527 CTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495
Score = 93.3 bits (102), Expect = 1e-13
Identities = 146/208 (70%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||||||||| || ||||||||||| || | | |||| || ||||| |
Sbjct 925929 CAAG-TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCA 925871
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || ||||| || || | ||||||||| | | ||| || ||||| || || |
Sbjct 925870 GCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGA 925811
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || || ||| | || | |||| | ||| ||||| | ||||| || || |
Sbjct 925810 TCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTC 925751
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104
| || |||||||| || |||| ||||||
Sbjct 925750 CGGTAAGAGTCTTGACAAAGATCTGCAT 925723
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| ||||| || ||||| || || ||||||||||| |||| | || | |||||
Sbjct 925198 GAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 925139
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||||||||| | | ||||||||| | | || || ||||| ||
Sbjct 925138 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 925079
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || |||||| | || | |||| ||| ||| || || || || || ||
Sbjct 925078 CTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGT 925019
Query 152072 TTTGCCCGTGA 152082
|| || ||||
Sbjct 925018 CTTTCCGGTGA 925008
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820400850117
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |