Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13] 27 sequences; 33,499,641 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq23 100 7e-16 >seq23 Length=2828041 Score = 100 bits (110), Expect = 7e-16 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| || || || ||||| || || |||||||| |||| | || | || || Sbjct 925479 GAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCGTC 925420 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 || || ||||| |||||||||||||| | ||||| |||| | ||| || ||||| Sbjct 925419 CTCGAGTTGCTTT--CCGGCGAAGATAAGGCGTTGCTGATCCGGAGGGATGCCCTCCTTG 925362 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 ||||| || ||| ||||| | || | | |||| || ||| || |||||||| || Sbjct 925361 TCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACCTCAAGAGTGATG 925302 Query 152070 GTTTTGCCCGT 152080 || ||||| || Sbjct 925301 GTCTTGCCGGT 925291 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/213 (71%), Gaps = 11/213 (5%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| |||||||||||||| |||| | ||| | || ||||| | Sbjct 925701 CAAG-TGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCA 925643 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||||| ||||||||||| || | ||| ||||||| | || || ||||| ||||| Sbjct 925642 ACTGCTTT--CCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTG 925585 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGAGTAATAGT 152071 || || ||||| | || | |||| ||| || || || || || || || Sbjct 925584 GATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGA---TTCCACCTCGAGCGTGATGGT 925528 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||||| ||||| Sbjct 925527 CTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||||||||| || ||||||||||| || | | |||| || ||||| | Sbjct 925929 CAAG-TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTTCGGCCGTCTTCCA 925871 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||| || || | ||||||||| | | ||| || ||||| || || | Sbjct 925870 GCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGGGATACCCTCCTTGTCCTGGA 925811 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || ||| | || | |||| | ||| ||||| | ||||| || || | Sbjct 925810 TCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGACTTCCAATGTAATGGTCTTTC 925751 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || |||||||| || |||| |||||| Sbjct 925750 CGGTAAGAGTCTTGACAAAGATCTGCAT 925723 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| || ||||| || || ||||||||||| |||| | || | ||||| Sbjct 925198 GAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATC 925139 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| | | ||||||||| | | || || ||||| || Sbjct 925138 CTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 925079 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | |||| ||| ||| || || || || || || Sbjct 925078 CTGGATCTTGCTCTTGACATTGTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGT 925019 Query 152072 TTTGCCCGTGA 152082 || || |||| Sbjct 925018 CTTTCCGGTGA 925008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820400850117