Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq23 145 2e-29
seq26 104 6e-17
seq12 91.5 4e-13
>seq23
Length=2828041
Score = 145 bits (160), Expect = 2e-29
Identities = 143/185 (77%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| || || || ||||| || ||||| || || ||||||||||| |||||||| |
Sbjct 925291 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCATCCGACACCATCGACAACGTCAAGTCA 925350
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| || ||||| || || ||||||||||| |||||||| |||||||||||||||||
Sbjct 925351 AAGATCCAAGACAAGGAGGGCATCCCTCCGGATCAGCAACGCCTTATCTTCGCCGGAAAG 925410
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| ||||| || || | || || |||| || ||| | || || || || ||||||||
Sbjct 925411 CAACTCGAGGACGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTGCAC 925470
Query 178125 CTTGT 178129
|||||
Sbjct 925471 CTTGT 925475
Score = 143 bits (158), Expect = 6e-29
Identities = 158/208 (76%), Gaps = 7/208 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
||||| ||||| || || || || || || || ||||| ||||||||||| ||||
Sbjct 925498 CAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC--- 925554
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||| || || |||||||| ||||| || ||||| || || || |||||||||||
Sbjct 925555 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 925614
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| || || |||||||||||||| ||| | ||||| || | ||||| |||| || |||
Sbjct 925615 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 925674
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128
||||||| || || ||||| || ||||
Sbjct 925675 ATCCAAAAGGAGTCCACACTTCA-CTTG 925701
Score = 134 bits (148), Expect = 3e-26
Identities = 142/187 (76%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| ||||| || |||||||||||||| || || ||||| ||||| || |||||
Sbjct 925008 TCACCGGAAAGACCATCACCCTCGAGGTTGAGTCTTCTGACACTATCGACAATGTCAAGA 925067
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| |||||||| || || || || || |||||||| || | ||||||||||| |
Sbjct 925068 GCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCTTGATCTTCGCCGGCA 925127
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||| || ||||| | || || |||| || ||| |||| || ||||| || ||||
Sbjct 925128 AGCAGCTTGAGGATGGTCGCACCCTGTCCGACTACAACATCCAGAAGGAATCTACCCTGC 925187
Query 178123 ATCTTGT 178129
|||| ||
Sbjct 925188 ATCTCGT 925194
>seq26
Length=2547288
Score = 104 bits (114), Expect = 6e-17
Identities = 107/139 (77%), Gaps = 1/139 (1%)
Strand=Plus/Minus
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| |||||||| ||||| |||||||| || || || || |||||||| || || ||
Sbjct 1485548 GACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGCCTG 1485489
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAA 178109
|||||||||||||| || ||||| ||||| | ||||| |||| || ||| |||| ||
Sbjct 1485488 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAG 1485429
Query 178110 GAATCAACACTGCATCTTG 178128
|| ||||| || || ||||
Sbjct 1485428 GAGTCAACCCTCCA-CTTG 1485411
>seq12
Length=3815900
Score = 91.5 bits (100), Expect = 4e-13
Identities = 90/115 (78%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073
||||| || || || || ||||||||||| || || |||||||||||||| ||||||||
Sbjct 2951518 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTCGAG 2951459
Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
||||| | |||||| | || || ||| |||| || || || || || || ||||
Sbjct 2951458 GATGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCCACCCTCCA-CTTG 2951405
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730783584238
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |