Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001443195.1_202015-11-13]
27 sequences; 33,499,641 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq23 147 2e-30
seq26 123 2e-23
seq12 111 1e-19
>seq23
Length=2828041
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || ||| |||||| || ||||| |||||||||
Sbjct 925721 CCACCACGGAGACGAAGCACCAAGTGAAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 925662
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| || | |||||| |||||||| || || ||||||||||||| |||
Sbjct 925661 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 925602
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| ||| || ||| ||| | | | ||||||||| || |||||
Sbjct 925601 ATACCCTCCTTGTCTTGGATCTTCGACTT-GACGTTGTCAATAGTGTCGCTTGATTCCAC 925543
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | ||| || || || || ||||| ||||| ||||| || |||||
Sbjct 925542 CTCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 925495
Score = 123 bits (136), Expect = 2e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || |||||||| || |||||||| ||||| ||||||||
Sbjct 925212 CCTCCACGAAGACGGAGGACGAGATGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGAC 925153
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||||||||| |||| |||||| ||||| | ||||
Sbjct 925152 AGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCTGGGGGA 925093
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 925092 ATGCCCTCCTTGTCCTGGATCTT 925070
Score = 122 bits (134), Expect = 8e-23
Identities = 152/206 (74%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | || || ||||| ||| ||||||||||||||| ||||||||
Sbjct 925493 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 925434
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| |||| ||||| ||||| |||||||| || ||||| || || |||| ||
Sbjct 925433 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 925374
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || ||||||||| ||| ||| ||| ||| | | | |||||| ||||| ||
Sbjct 925373 ATGCCCTCCTTGTCTTGGATCTTTGACTT-GACGTTGTCGATGGTGTCGGATGACTCAAC 925315
Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840
||| | || || || || || ||||
Sbjct 925314 CTCAAGAGTGATGGTCTTGCCGGTCA 925289
>seq26
Length=2547288
Score = 123 bits (136), Expect = 2e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || ||||||||| ||||| ||||||||
Sbjct 1485391 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAC 1485450
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || ||||| ||||| |||||||| ||||||||||||||||||| ||||
Sbjct 1485451 AGAGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAGGCGCTGTTGGTCCGGGGGA 1485510
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 1485511 ATGCCCTCCTTGTCCTGGATCTT 1485533
>seq12
Length=3815900
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | |||| || || ||| ||||||||| ||||| ||||| ||
Sbjct 2951385 CCACCACGAAGGCGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAA 2951444
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || ||||||||||| |||||||| ||||| ||||| ||||||| ||||
Sbjct 2951445 AGAGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGA 2951504
Query 41756 ACGCTCTCCTTGTC 41769
| || |||||||||
Sbjct 2951505 ATGCCCTCCTTGTC 2951518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303843972400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |