Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq4 156 9e-33
>seq4
Length=2069545
Score = 156 bits (172), Expect = 9e-33
Identities = 567/870 (65%), Gaps = 27/870 (3%)
Strand=Plus/Minus
Query 229783 TGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAGTT--CCTCTGA 229840
||| | |||||||||||||| | ||| ||||||||||| | ||||| | |||||
Sbjct 1053816 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 1053757
Query 229841 ACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGAACGTCATTTCATCAAAC 229900
| | ||| | ||||||| || ||||| || ||||| || |||||| |
Sbjct 1053756 AAG--GACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCC 1053699
Query 229901 ACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCT-GCAGACCAA- 229958
|| |||| | || ||||||| ||||||||| ||||| | || || || | || | |
Sbjct 1053698 ACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGAT 1053639
Query 229959 -CTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCA 230017
|| ||| | ||||| | || |||||||| || || | || ||||| | |
Sbjct 1053638 TCTCTAGCG---AAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGA 1053582
Query 230018 ACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGC 230077
|| | || || || || ||||||| |||||| | ||| ||| | |
Sbjct 1053581 TGGAGAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGA-GCCC 1053523
Query 230078 AAGAACGGAACG-AGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCA 230136
||| | | | | | || || | ||||| || |||||||| | | || |||||
Sbjct 1053522 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 1053463
Query 230137 AAGTGGGCTCAGAAATGG--CTAGAACCTGGTAAATCG---TTTGCCGAGCGTCTCGTCG 230191
| ||||| | | |||| || || | || || || ||| | || ||||| |
Sbjct 1053462 GACTGGGCCCTGCGATGGATCTCCGACAAG--AACTCCACATTCGCCAACCGCCTCGTTG 1053405
Query 230192 CCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGC 230251
| | | |||||| ||||| | || ||| |||| | ||||||| |||||
Sbjct 1053404 CATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCA 1053345
Query 230252 GGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGG 230311
||| ||| ||||||| || || | || |||||| ||||| || |||||||
Sbjct 1053344 AGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGG 1053285
Query 230312 GTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTC 230370
| | || || | | |||| | ||| | | || ||| ||||||||| ||| |
Sbjct 1053284 GCATGCA-CACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGC--CCAGCC 1053228
Query 230371 GAGA--CGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTG 230428
||| | |||| | ||||| || ||||| || || | || |||||||| | | |
Sbjct 1053227 CAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCG 1053168
Query 230429 ACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487
|||| | ||||| ||| || | |||||||||||| || ||| | || ||||||||
Sbjct 1053167 ACGCACTACCATG-CGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAG 1053109
Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547
||||| || ||||| | | | || || || ||| || || ||| || | | |||
Sbjct 1053108 TTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCAAC 1053049
Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607
||||| | || |||||| |||||| || || ||||||||||||||||| |||||
Sbjct 1053048 CCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGC 1052989
Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGATG 230637
||| | ||||| |||| | | ||||| |||
Sbjct 1052988 GTCGGCGACTACCAGAAGGCCGGTGTCATG 1052959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057821885674280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |