Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq4 156 9e-33 >seq4 Length=2069545 Score = 156 bits (172), Expect = 9e-33 Identities = 567/870 (65%), Gaps = 27/870 (3%) Strand=Plus/Minus Query 229783 TGGGATATGTACAAGAAGGCGGTGGCAACTTTCTGGACCACTGAGGAAGTT--CCTCTGA 229840 ||| | |||||||||||||| | ||| ||||||||||| | ||||| | ||||| Sbjct 1053816 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 1053757 Query 229841 ACGCAGACGTCGTCGACTGGCGTGAGAAACTCAATGACGACGAACGTCATTTCATCAAAC 229900 | | ||| | ||||||| || ||||| || ||||| || |||||| | Sbjct 1053756 AAG--GACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCC 1053699 Query 229901 ACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTGTGATGGAAAATCT-GCAGACCAA- 229958 || |||| | || ||||||| ||||||||| ||||| | || || || | || | | Sbjct 1053698 ACGTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGAT 1053639 Query 229959 -CTTTAGTGTGGAAGTAACGGTTCCAGAGGCACGGCAATTTTATGCTTACCAAACATTCA 230017 || ||| | ||||| | || |||||||| || || | || ||||| | | Sbjct 1053638 TCTCTAGCG---AAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGA 1053582 Query 230018 ACGAATCTATCCATTCTGAACAATATGCTCTGCTTATCGACGCGCTTATTTCCGACGAGC 230077 || | || || || || ||||||| |||||| | ||| ||| | | Sbjct 1053581 TGGAGAACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGA-GCCC 1053523 Query 230078 AAGAACGGAACG-AGCTTTTTGATGCCATTGAAAACATCCCGGCGGTTCATAACAAGGCA 230136 ||| | | | | | || || | ||||| || |||||||| | | || ||||| Sbjct 1053522 AAGCAGCGCAGGTACCTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCC 1053463 Query 230137 AAGTGGGCTCAGAAATGG--CTAGAACCTGGTAAATCG---TTTGCCGAGCGTCTCGTCG 230191 | ||||| | | |||| || || | || || || ||| | || ||||| | Sbjct 1053462 GACTGGGCCCTGCGATGGATCTCCGACAAG--AACTCCACATTCGCCAACCGCCTCGTTG 1053405 Query 230192 CCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGC 230251 | | | |||||| ||||| | || ||| |||| | ||||||| ||||| Sbjct 1053404 CATTCGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCA 1053345 Query 230252 GGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGG 230311 ||| ||| ||||||| || || | || |||||| ||||| || ||||||| Sbjct 1053344 AGAAGCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGG 1053285 Query 230312 GTCTCCATCAAC-AGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACAAGCTACCATTC 230370 | | || || | | |||| | ||| | | || ||| ||||||||| ||| | Sbjct 1053284 GCATGCA-CACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGC--CCAGCC 1053228 Query 230371 GAGA--CGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTG 230428 ||| | |||| | ||||| || ||||| || || | || |||||||| | | | Sbjct 1053227 CAGAGTCTGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCG 1053168 Query 230429 ACGCTATTCCATGTCGC-CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAA 230487 |||| | ||||| ||| || | |||||||||||| || ||| | || |||||||| Sbjct 1053167 ACGCACTACCATG-CGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAG 1053109 Query 230488 TTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAAC 230547 ||||| || ||||| | | | || || || ||| || || ||| || | | ||| Sbjct 1053108 TTCGTCGCTGACCGTCTGCTGTTGGCCCTCGGCAACGTCAAGGTCTACCACGCCACCAAC 1053049 Query 230548 CCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGT 230607 ||||| | || |||||| |||||| || || ||||||||||||||||| ||||| Sbjct 1053048 CCCTTCGACTTCATGGAGAACATTTCTCTGGCTGGTAAGACCAACTTCTTCGAGAAGCGC 1052989 Query 230608 GTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 ||| | ||||| |||| | | ||||| ||| Sbjct 1052988 GTCGGCGACTACCAGAAGGCCGGTGTCATG 1052959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821885674280