Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 4e-13 >seq7 Length=1637960 Score = 89.7 bits (98), Expect = 4e-13 Identities = 134/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 19041 TACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTT 19100 ||||||||||| | |||||||| || || ||||| |||||||| || || || ||| Sbjct 246021 TACCAGAGATCCTGCGATATGGGTCTCGGTGTACCTTTCAACATCGCCTCCTACGCGCTT 245962 Query 19101 CTTACCTACATAGTAGCGCATGT-TACAGGACTTAAAACC--GGAGATTTAATTCATACA 19157 || ||| |||| |||| ||||| | | ||| ||| || | | |||| | |||||| Sbjct 245961 CTCACCCACATGCTAGCTCATGTGTGC--GACCTAACGCCCGGTACATTT-ACACATACA 245905 Query 19158 ATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCT--AGCTC 19215 ||||| |||||||| | || | | || |||||||| | || |||||||| ||| | Sbjct 245904 ATGGGCGATGCACACGTATATATCGACCACATAGATGCGCTCAAGGTGCAGCTGGAGCGC 245845 Query 19216 GATCC 19220 || || Sbjct 245844 GAACC 245840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399503240443020