Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq15 125 8e-24
>seq15
Length=714589
Score = 125 bits (138), Expect = 8e-24
Identities = 449/690 (65%), Gaps = 14/690 (2%)
Strand=Plus/Plus
Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040
||||| || || | ||| ||||| | | ||| | |||| || | || || |||||
Sbjct 178428 CCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATG 178487
Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100
||||| ||||||||||| || || || ||||| | | | ||||| || ||
Sbjct 178488 AAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCG 178547
Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATAT 54159
||||| || || ||||| |||| | | |||| ||||| || || | ||| ||
Sbjct 178548 TGGTTCTTGCGCAGGTCAAGGAA-GCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGAT 178606
Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219
|| | | || || || ||||| || ||||| || | || | ||| ||||| || ||
Sbjct 178607 GGCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTA 178666
Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279
|| | | ||| ||||| | ||| || |||| || || || || ||| || ||
Sbjct 178667 TACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCC 178726
Query 54280 ACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337
| | |||||||| | | ||| || || || || || || | || ||||| ||
Sbjct 178727 AGTAGCACGAATGCGGTGCACGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAAC 178784
Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397
|| || || | || || || ||||| || || || || ||| |||||| | ||
Sbjct 178785 GCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGG 178844
Query 54398 AAACAGCTAGACATT--TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455
|| || |||||| |||||| | || ||||| || || || || || || ||||
Sbjct 178845 AAGCATGACGACATTTGTGGTGATG--GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGT 178902
Query 54456 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCA 54513
| || || | |||| ||| | |||| | ||| |||||||| || || || || ||
Sbjct 178903 GTGTGAAGTACTTTTGAGACATGTAG-TCGTAGGTCTCGATGGCCTTCTCAATGTCATCA 178961
Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573
| ||||| || || || |||||||| | |||||| || || | || ||| ||||
Sbjct 178962 CCG-TGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCC 179020
Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 54633
|||||| || | || || || | || || |||||||| | | ||| ||
Sbjct 179021 GTTTATGCGGAGGAGATATGAACGCTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAA 179080
Query 54634 GTCTCGTTCGTAAATAATAACTGAGTTGAG 54663
||| || ||||| | ||| | ||||||||
Sbjct 179081 GTCACGGTCGTAGACGATAGCCGAGTTGAG 179110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593720442242880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |