Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 125 8e-24 >seq15 Length=714589 Score = 125 bits (138), Expect = 8e-24 Identities = 449/690 (65%), Gaps = 14/690 (2%) Strand=Plus/Plus Query 53981 CCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATA 54040 ||||| || || | ||| ||||| | | ||| | |||| || | || || ||||| Sbjct 178428 CCAGGGCACTCGTTCGGGCACATGAGTGTCCAGTTGCCGTTGTCTTGGACACGCTTCATG 178487 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 ||||| ||||||||||| || || || ||||| | | | ||||| || || Sbjct 178488 AAGAGGTCAGGAATCCACAGGGCGTAGAAGAGATCGCGAGCGCGGACCTCCTCCTTGCCG 178547 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATAT 54159 ||||| || || ||||| |||| | | |||| ||||| || || | ||| || Sbjct 178548 TGGTTCTTGCGCAGGTCAAGGAA-GCCAAAGACGTCAGCGTGCCATGGCTCGAGGTAGAT 178606 Query 54160 GGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 54219 || | | || || || ||||| || ||||| || | || | ||| ||||| || || Sbjct 178607 GGCGAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACATAGCGAGCAGTGTTGTTGTA 178666 Query 54220 AACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCC 54279 || | | ||| ||||| | ||| || |||| || || || || ||| || || Sbjct 178667 TACACGGAGCATGGGAATGAGACCGTTAGATGTTCCGTTAGTGCCACCGATGTATGAGCC 178726 Query 54280 ACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 | | |||||||| | | ||| || || || || || || | || ||||| || Sbjct 178727 AGTAGCACGAATGCGGTGCACGTTG--AGGCCAATACCGCCAGCGGTCTTGGAGATCAAC 178784 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 || || || | || || || ||||| || || || || ||| |||||| | || Sbjct 178785 GCACAGGTCTTGAGTGTGTCGTAAATGCCGTCGATGCTGTCCTCCTTCATGTCGATGAGG 178844 Query 54398 AAACAGCTAGACATT--TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 || || |||||| |||||| | || ||||| || || || || || || |||| Sbjct 178845 AAGCATGACGACATTTGTGGTGATG--GTGTGCCCGCGTTGAACAACGTCGGCGAGGCGT 178902 Query 54456 GCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATC-CCA 54513 | || || | |||| ||| | |||| | ||| |||||||| || || || || || Sbjct 178903 GTGTGAAGTACTTTTGAGACATGTAG-TCGTAGGTCTCGATGGCCTTCTCAATGTCATCA 178961 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573 | ||||| || || || |||||||| | |||||| || || | || ||| |||| Sbjct 178962 CCG-TGAATGCCAACAGCAACACGCATGAGCATGTGTTGTGGGCGCTCGGCGACCTTGCC 179020 Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 54633 |||||| || | || || || | || || |||||||| | | ||| || Sbjct 179021 GTTTATGCGGAGGAGATATGAACGCTCGAGTGTCTTGAAACCAAAGAACTGGTAGTTGAA 179080 Query 54634 GTCTCGTTCGTAAATAATAACTGAGTTGAG 54663 ||| || ||||| | ||| | |||||||| Sbjct 179081 GTCACGGTCGTAGACGATAGCCGAGTTGAG 179110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720442242880