Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 136 5e-27 >seq1 Length=2771824 Score = 136 bits (150), Expect = 5e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| |||| ||||||||| || ||||| || | ||||| || |||| || | |||| Sbjct 1871539 TGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGAGTACGGCCGTCTTCCAACTGC 1871598 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || ||||| ||||| ||||| ||||| | || | | ||||||||| ||| || Sbjct 1871599 TTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCTTGGATCTTC 1871658 Query 43101 TGTTTGAGCGTCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 |||| ||| | || |||||||| |||||||| |||| ||||||||| ||||| || Sbjct 1871659 GACTTGA-CGTTGTCAATAGTGTCGCTTGATTCCACCTCGAGCGTGATGGTCTTGCCAGT 1871717 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || ||||||||||| Sbjct 1871718 CAGGGTCTTGACGAAGATTTGCAT 1871741 Score = 127 bits (140), Expect = 2e-24 Identities = 169/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008 |||||||||| || | | ||| | |||||| || | || |||||| || || |||| Sbjct 1871279 CCTATTGTCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGT 1871338 Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068 | || | || || || |||| || ||||||||||||||||| ||||| |||||||||| Sbjct 1871339 AGTCTGAGAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGT 1871398 Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 43128 | | || | | |||||||||| ||| || || | | | | ||||||||| | Sbjct 1871399 CAGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAG 1871458 Query 43129 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || || || | || ||||| || || || || ||||| |||||||| ||||| Sbjct 1871459 ACTCGACTTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816484955680