Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 154 1e-32 >seq1 Length=2771824 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | ||||||| ||| | |||| || ||||| ||||||||||| || Sbjct 1871286 TCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 1871345 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| |||| |||| |||||| || ||||||||||| ||||||||||| || Sbjct 1871346 GAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGG 1871405 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||||| || | | |||| ||| | || ||||| Sbjct 1871406 GATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGAC 1871465 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || ||||| ||||| || |||||||||||||| Sbjct 1871466 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || ||||| | || || || || |||||||||||||| Sbjct 1871515 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 1871574 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| ||||||||||| || ||||| ||||| ||||| ||||| || Sbjct 1871575 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 1871634 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | ||| | ||||| || Sbjct 1871635 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 1871694 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||| ||||| || || || || || ||||| ||||| Sbjct 1871695 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || || ||||| | || || ||||| ||||||||||||||| Sbjct 1871743 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 1871802 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || ||||| || || || ||||| || || Sbjct 1871803 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 1871862 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| |||||| ||| | | | | || | |||| || || || Sbjct 1871863 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 1871922 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| |||||||| Sbjct 1871923 TCAAGAGTGATGGTCTTGCCGGT 1871945 Score = 86.0 bits (94), Expect = 4e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||||||| || | || || | ||||||||| ||||| Sbjct 1872059 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAA 1872118 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || | ||||||||||| ||| | || ||||||||| ||||| ||| | || Sbjct 1872119 GATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATT 1872178 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGA 34367 | | || | || | || || || || | |||||||| || ||||||| Sbjct 1872179 GTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGTGA 1872228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071385759360