Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq1 154 1e-32
>seq1
Length=2771824
Score = 154 bits (170), Expect = 1e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
|||||| || || | ||||||| ||| | |||| || ||||| ||||||||||| ||
Sbjct 1871286 TCCGCCACGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCTGA 1871345
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
||| ||| |||| |||| |||||| || ||||||||||| ||||||||||| ||
Sbjct 1871346 GAGCGTTCGGCCGTCTTCCAGCTGCTTACCAGCGAAAATGAGACGCTGCTGGTCAGGAGG 1871405
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| | ||||||||| ||||| ||||| || | | |||| ||| | || |||||
Sbjct 1871406 GATACCCTCCTTGTCCTGGATCTTGGACTTTACATTGTCGATCGTGTCGCTAGACTCGAC 1871465
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| || ||||| || ||||| ||||| || ||||||||||||||
Sbjct 1871466 TTCCAATGTAATGGTCTTTCCGGTAAGAGTCTTGACAAAGATCTGCAT 1871513
Score = 116 bits (128), Expect = 2e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| |||||||| | || || ||||| | || || || || ||||||||||||||
Sbjct 1871515 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTTTGGATGTTGTAGTCGGAG 1871574
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| |||| |||| ||||||||||| || ||||| ||||| ||||| ||||| ||
Sbjct 1871575 AGAGTACGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCCGGAGGA 1871634
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| | ||||||||| ||||| ||| | | | | || | ||| | ||||| ||
Sbjct 1871635 ATACCCTCCTTGTCTTGGATCTTCGACTTGACGTTGTCAATAGTGTCGCTTGATTCCACC 1871694
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||||||| ||||| || || || || || ||||| |||||
Sbjct 1871695 TCGAGCGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 1871741
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
|| |||||||| | || || ||||| | || || ||||| |||||||||||||||
Sbjct 1871743 CCACCGCGCAGGCGGAGGACAAGGTGCAGTGTGGACTCCTTCTGAATGTTGTAGTCGGAC 1871802
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||| || ||||| || || || ||||| || ||
Sbjct 1871803 AGGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGGCGTTGCTGATCCGGAGGG 1871862
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| |||||| ||| | | | | || | |||| || || ||
Sbjct 1871863 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACGTTGTCGATGGTGTCGGATGACTCAACC 1871922
Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365
|| | |||||||| ||||||||
Sbjct 1871923 TCAAGAGTGATGGTCTTGCCGGT 1871945
Score = 86.0 bits (94), Expect = 4e-12
Identities = 121/170 (71%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||||||||| || | || || | ||||||||| |||||
Sbjct 1872059 TTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAA 1872118
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317
|| | ||||||||||| ||| | || ||||||||| ||||| ||| | ||
Sbjct 1872119 GATCAAGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTGACATT 1872178
Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGA 34367
| | || | || | || || || || | |||||||| || |||||||
Sbjct 1872179 GTCGATAGTGTCAGAAGACTCAACCTCGAGGGTGATGGTCTTTCCGGTGA 1872228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323071385759360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |