Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq15 116 8e-21
>seq15
Length=714589
Score = 116 bits (128), Expect = 8e-21
Identities = 439/685 (64%), Gaps = 19/685 (3%)
Strand=Plus/Minus
Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877
||| | ||||||| |||||| || || ||| || ||||||||| || | ||||||
Sbjct 179074 TACCAGTTCTTTGGTTTCAAGACACTCGAGCGTTCATATCTCCTCCGCATAAACGGCAAG 179015
Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937
||| || || || |||||| | ||||| || ||||| || |||||| ||||||
Sbjct 179014 GTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGAC 178955
Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997
|| |||| | ||||||| ||| | ||| | || | | ||||| ||| |
Sbjct 178954 ATTGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCG 178895
Query 248998 CCGACGCTCTTCAACGCCGGTAC--CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055
|||||| | |||||||| || || | ||| || || || || ||||| || | |
Sbjct 178894 CCGACGTTGTTCAACGCGGGCACACCATCACCA--CAAATGTCGTCATGCTTCCTCATCG 178837
Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGA 249112
|||| | || ||| ||||||||||||| ||||| || | |||| ||| ||
Sbjct 178836 ACATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCA---AGACCTGTGCGTTGA 178780
Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172
| || || ||| ||||| || || ||| ||| | ||| || || | || || |
Sbjct 178779 TCTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCAT 178720
Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT 249232
||||| || || || || | | ||| || | ||| | || || | |
Sbjct 178719 ACATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACA 178660
Query 249233 CCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGT 249286
||| || | | || |||||| || ||||| | || | |||||||| |
Sbjct 178659 ACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGCCCA---GGTGCCTTCGCCATCT 178603
Query 249287 ATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCA 249346
| | || |||||||| || | || | ||||| ||| || |||||| ||||||
Sbjct 178602 ACCTCGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCA 178543
Query 249347 ACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGC 249406
| ||| | | || || || |||||||||| ||||||| | | ||| | ||||||
Sbjct 178542 AGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCCCTGTGGATTCCTGACCTCTTCATGA 178483
Query 249407 GCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCA 249466
|| ||| | | | ||||| | ||||| || | | ||| ||| ||| | ||||
Sbjct 178482 AGCGTGTCCAAGACAACGGCAACTGGACACTCATGTGCCCGAACGAGTGCCCTGGCCTCG 178423
Query 249467 TCGATCTACACGGCGCCGACTTCGA 249491
|||| | |||| | || |||||
Sbjct 178422 CCGATGTCTACGGTGAAGAATTCGA 178398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073764253809408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |