Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq15 116 8e-21 >seq15 Length=714589 Score = 116 bits (128), Expect = 8e-21 Identities = 439/685 (64%), Gaps = 19/685 (3%) Strand=Plus/Minus Query 248818 TACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAG 248877 ||| | ||||||| |||||| || || ||| || ||||||||| || | |||||| Sbjct 179074 TACCAGTTCTTTGGTTTCAAGACACTCGAGCGTTCATATCTCCTCCGCATAAACGGCAAG 179015 Query 248878 ATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGAC 248937 ||| || || || |||||| | ||||| || ||||| || |||||| |||||| Sbjct 179014 GTCGCCGAGCGCCCACAACACATGCTCATGCGTGTTGCTGTTGGCATTCACGGTGATGAC 178955 Query 248938 ATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACA 248997 || |||| | ||||||| ||| | ||| | || | | ||||| ||| | Sbjct 178954 ATTGAGAAGGCCATCGAGACCTACGACTACATGTCTCAAAAGTACTTCACACACGCCTCG 178895 Query 248998 CCGACGCTCTTCAACGCCGGTAC--CGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTG 249055 |||||| | |||||||| || || | ||| || || || || ||||| || | | Sbjct 178894 CCGACGTTGTTCAACGCGGGCACACCATCACCA--CAAATGTCGTCATGCTTCCTCATCG 178837 Query 249056 CCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC---GGCGAAGA 249112 |||| | || ||| ||||||||||||| ||||| || | |||| ||| || Sbjct 178836 ACATGAAGGAGGACAGCATCGACGGCATTTACGACACACTCA---AGACCTGTGCGTTGA 178780 Query 249113 TTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGT 249172 | || || ||| ||||| || || ||| ||| | ||| || || | || || | Sbjct 178779 TCTCCAAGACCGCTGGCGGTATTGGCCTCAACGTGCACCGCATTCGTGCTACTGGCTCAT 178720 Query 249173 ACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGT 249232 ||||| || || || || | | ||| || | ||| | || || | | Sbjct 178719 ACATCGGTGGCACTAACGGAACATCTAACGGTCTCATTCCCATGCTCCGTGTATACAACA 178660 Query 249233 CCACCGCCAGGTTCATCAACCAGGCCGG------GCGCCGAAAGGGGTCGTTCGCCATGT 249286 ||| || | | || |||||| || ||||| | || | |||||||| | Sbjct 178659 ACACTGCTCGCTATGTCGACCAGGGTGGCAACAAGCGCCCA---GGTGCCTTCGCCATCT 178603 Query 249287 ATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCA 249346 | | || |||||||| || | || | ||||| ||| || |||||| |||||| Sbjct 178602 ACCTCGAGCCATGGCACGCTGACGTCTTTGGCTTCCTTGACCTGCGCAAGAACCACGGCA 178543 Query 249347 ACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGC 249406 | ||| | | || || || |||||||||| ||||||| | | ||| | |||||| Sbjct 178542 AGGAGGAGGTCCGCGCTCGCGATCTCTTCTACGCCCTGTGGATTCCTGACCTCTTCATGA 178483 Query 249407 GCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCA 249466 || ||| | | | ||||| | ||||| || | | ||| ||| ||| | |||| Sbjct 178482 AGCGTGTCCAAGACAACGGCAACTGGACACTCATGTGCCCGAACGAGTGCCCTGGCCTCG 178423 Query 249467 TCGATCTACACGGCGCCGACTTCGA 249491 |||| | |||| | || ||||| Sbjct 178422 CCGATGTCTACGGTGAAGAATTCGA 178398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764253809408