Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24] 156 sequences; 34,355,870 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq15 327 1e-84 seq4 167 2e-36 seq1 107 2e-18 >seq15 Length=714589 Score = 327 bits (362), Expect = 1e-84 Identities = 653/956 (68%), Gaps = 15/956 (2%) Strand=Plus/Plus Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087 || |||| ||||| ||||| ||||| || | |||||||| ||||| || || || | Sbjct 178160 AGCCAAG-TTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACA 178218 Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147 ||| | || || || | || |||||||||| || || ||||| | |||| Sbjct 178219 AGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCT 178278 Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAG 23207 |||| ||||| | || | || |||||| ||||| ||| | || || ||| | Sbjct 178279 TGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCT 178338 Query 23208 TCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTC--CTCGTACTTTTGGTACAACGC 23265 | || ||| ||||| ||| | || ||| |||| | |||||| | | ||||| || Sbjct 178339 TTTGTGCGCGAACA-GTCTCGCGGCCCTTG-TTCTGCTTCTCGTAGCTCTCGTACAGGGC 178396 Query 23266 GTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324 || ||||| ||||||| ||| ||||| ||||| || | | |||| |||||||| Sbjct 178397 CTCGAATTCTTCACCGTAGACA-TCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTG 178455 Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 |||| | || | || || || |||| || || || || ||||| || ||||||| Sbjct 178456 TCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGA 178515 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 | || ||||| ||||| |||||||| |||||| |||||| || || | ||| | | Sbjct 178516 AGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAA 178575 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504 | ||||| || ||||| ||||||||||| | ||| || || || || | ||| ||||| | Sbjct 178576 AGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCAC 178635 Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564 |||| ||||| || || || ||||||||||| || | ||||| || | ||||||||| | Sbjct 178636 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAG 178695 Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624 | | ||| ||| | | || || | || |||| | ||| |||| || | Sbjct 178696 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGC 178755 Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684 | || || || | | || || |||| ||| || || || |||||||| ||||| | Sbjct 178756 CAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGT 178815 Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744 ||||||||||||| || | ||| | ||| || || |||||||| | | || || Sbjct 178816 CGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGC 178875 Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTAC 23803 | || ||||| ||||| |||||| || ||||| | ||||| ||| | ||| Sbjct 178876 CCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCGTAG 178934 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || |||||||| |||||||| || ||||| || || | || || ||||| | |||| Sbjct 178935 GTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATG 178994 Query 23864 TATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920 | ||| || | || ||||| | |||||| || || ||||||||||| | | Sbjct 178995 TGTTGTGGGCGCTCGGCGACCTT---GCCGTTTATGCGGAGGAGATATGAACGCTCGAGT 179051 Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || || || ||||| | | ||||| |||||||| |||| || || ||||| || Sbjct 179052 GTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 179107 Score = 143 bits (158), Expect = 2e-29 Identities = 386/583 (66%), Gaps = 13/583 (2%) Strand=Plus/Plus Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202 |||| || ||||| |||||||| ||||| ||||| |||||| | ||| || || | Sbjct 177274 TGGTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAG 177333 Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262 | || | || || | | ||| | ||||| | || | ||||||| ||| || | Sbjct 177334 AAGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGCGACTGAGACTGGTCAA 177393 Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322 |||| || || || || |||||||| | || | | | ||| ||| || ||||| |||| Sbjct 177394 TAAAAGCACCACGGTCAGCGGCCATCTCAATGATTCTTCGCTGCGAGATCTCCCAGACGG 177453 Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTA 22381 ||||||| ||| | | |||| || || | | | ||||| | || || | Sbjct 177454 TCTTGTAAAGTGTCTTTGTCTCCTCAGGGAT-GTTGGGAATCCTGGCAATCGAACCTCCA 177512 Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441 | | ||||| || || || | || ||||| ||| ||| || | || ||| Sbjct 177513 TCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTG 177572 Query 22442 ACCA--GATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499 | || ||| |||| || || || ||||| || | | ||| ||||| || |||| Sbjct 177573 AGCAACCATG--GGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGT 177630 Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559 |||| ||| | || ||||| | || ||||| ||||| ||||| | || || || || | Sbjct 177631 TGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTG 177690 Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCA 22619 |||| || || | || |||||||| | || ||||||| | ||| || ||| || Sbjct 177691 GCATGGGTGCAATGAGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAG 177750 Query 22620 TCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACAC 22677 || ||||||||| || || | ||||| ||||| |||||||||||| || | | || Sbjct 177751 ACGCCCAGTCCCAGAGGTCAGTAGGCGTGACATT---CCACATATCGTACTGGAGGATAC 177807 Query 22678 GCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCA 22720 | | || || || |||||||| || | ||| |||||| Sbjct 177808 CCTGGGATACG--GGAGATCCTTCGTAGGTCTTGTAAGGACCA 177848 >seq4 Length=2069545 Score = 167 bits (184), Expect = 2e-36 Identities = 474/724 (65%), Gaps = 11/724 (2%) Strand=Plus/Minus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | |||||||| ||||| || || || || ||||||| || || | ||||| || Sbjct 1053816 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 1053757 Query 57633 AAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689 ||||| || ||| ||| | | |||| || ||| | || || ||| Sbjct 1053756 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 1053697 Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 || | || || ||||| || |||||||| ||||| |||||||| | || || |||| Sbjct 1053696 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATTC 1053637 Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809 || ||||| ||| | | ||||| ||||||| ||||| || ||| | || || Sbjct 1053636 TCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGAG 1053577 Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869 ||||| || ||||| | || || || |||||||| || ||| | | || | | || Sbjct 1053576 AACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCAG 1053517 Query 57870 AA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTG 57928 | ||| || |||||||| ||||| | || ||| ||| ||||||||| || || Sbjct 1053516 CGCAGGTAC-CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGACTG 1053458 Query 57929 GTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTT 57985 | | | |||||| || || | |||| |||||| | | || | || || Sbjct 1053457 GGCCCTGCGATGGATCTC---CGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATT 1053401 Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045 |||||| || || ||||| ||||| || || || | || || ||| | ||||| Sbjct 1053400 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 1053341 Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105 ||||| ||||||||||| || || || ||||||| | || || || |||||||| | Sbjct 1053340 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 1053281 Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCG 58165 || || || || || ||||| | | ||||| | | | || || || | | || Sbjct 1053280 GCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGTC 1053221 Query 58166 CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225 || | || ||||| || || |||| ||| || | ||||| | | ||| || || Sbjct 1053220 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 1053161 Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285 ||| || ||||||| |||||| | | | |||| | ||||| ||||| || || Sbjct 1053160 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 1053101 Query 58286 CGAC 58289 ||| Sbjct 1053100 TGAC 1053097 >seq1 Length=2771824 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| || ||||| |||| || ||| | | Sbjct 1871741 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 1871682 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| || || |||||||| || | || || ||||| Sbjct 1871681 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 1871622 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || ||||| || || |||||||||||| ||| | ||| || ||| Sbjct 1871621 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 1871562 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || || || || || || || | ||| | || |||| Sbjct 1871561 ATCCAAAAGGAGTCCACACTGCACCTTGTCCTCCGCCTGCGCGGTGGTA 1871513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765530755520