Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alternaria_20alternata_20[genbank_20GCA_5F001572055.1_202016-02-24]
156 sequences; 34,355,870 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq15 327 1e-84
seq4 167 2e-36
seq1 107 2e-18
>seq15
Length=714589
Score = 327 bits (362), Expect = 1e-84
Identities = 653/956 (68%), Gaps = 15/956 (2%)
Strand=Plus/Plus
Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087
|| |||| ||||| ||||| ||||| || | |||||||| ||||| || || || |
Sbjct 178160 AGCCAAG-TTGCAAACGGCGACCTCATCAGGAGCAGTGTACTCCACAATCTCAGTGCACA 178218
Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147
||| | || || || | || |||||||||| || || ||||| | ||||
Sbjct 178219 AGTTGGAGCTGCGGATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCGTCCT 178278
Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAG 23207
|||| ||||| | || | || |||||| ||||| ||| | || || ||| |
Sbjct 178279 TGTAAAGCATAAAGGGGTTACCAGTCTCGGTCTGCGCCTCAAGAATGGCGTACCAAAGCT 178338
Query 23208 TCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTC--CTCGTACTTTTGGTACAACGC 23265
| || ||| ||||| ||| | || ||| |||| | |||||| | | ||||| ||
Sbjct 178339 TTTGTGCGCGAACA-GTCTCGCGGCCCTTG-TTCTGCTTCTCGTAGCTCTCGTACAGGGC 178396
Query 23266 GTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGAC 23324
|| ||||| ||||||| ||| ||||| ||||| || | | |||| ||||||||
Sbjct 178397 CTCGAATTCTTCACCGTAGACA-TCGGCGAGGCCAGGGCACTCGTTCGGGCACATGAGTG 178455
Query 23325 TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384
|||| | || | || || || |||| || || || || ||||| || |||||||
Sbjct 178456 TCCAGTTGCCGTTGTCTTGGACACGCTTCATGAAGAGGTCAGGAATCCACAGGGCGTAGA 178515
Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444
| || ||||| ||||| |||||||| |||||| |||||| || || | ||| | |
Sbjct 178516 AGAGATCGCGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAAGCCAA 178575
Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGC 23504
| ||||| || ||||| ||||||||||| | ||| || || || || | ||| ||||| |
Sbjct 178576 AGACGTCAGCGTGCCATGGCTCGAGGTAGATGGCGAAGGCACCTGGGCGCTTGTTGCCAC 178635
Query 23505 CCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGG 23564
|||| ||||| || || || ||||||||||| || | ||||| || | ||||||||| |
Sbjct 178636 CCTGGTCGACATAGCGAGCAGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTAG 178695
Query 23565 ACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAAC 23624
| | ||| ||| | | || || | || |||| | ||| |||| || |
Sbjct 178696 ATGTTCCGTTAGTGCCACCGATGTATGAGCCAGTAGCACGAATGCGGTGCACGTTGAGGC 178755
Query 23625 CTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCT 23684
| || || || | | || || |||| ||| || || || |||||||| ||||| |
Sbjct 178756 CAATACCGCCAGCGGTCTTGGAGATCAACGCACAGGTCTTGAGTGTGTCGTAAATGCCGT 178815
Query 23685 CGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAG 23744
||||||||||||| || | ||| | ||| || || |||||||| | | || ||
Sbjct 178816 CGATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGACGACATTTGTGGTGATGGTGTGC 178875
Query 23745 CGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGTAC 23803
| || ||||| ||||| |||||| || ||||| | ||||| ||| | |||
Sbjct 178876 CCGCGTTGAACAACGTCGGCGAGGCGTGTGTGAAGTACTTTTGAGACATGTAG-TCGTAG 178934
Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863
|| |||||||| |||||||| || ||||| || || | || || ||||| | ||||
Sbjct 178935 GTCTCGATGGCCTTCTCAATGTCATCACCGTGAATGCCAACAGCAACACGCATGAGCATG 178994
Query 23864 TATTGAGGTCTCT---CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920
| ||| || | || ||||| | |||||| || || ||||||||||| | |
Sbjct 178995 TGTTGTGGGCGCTCGGCGACCTT---GCCGTTTATGCGGAGGAGATATGAACGCTCGAGT 179051
Query 23921 GTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
|| || || ||||| | | ||||| |||||||| |||| || || ||||| ||
Sbjct 179052 GTCTTGAAACCAAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATAGCCGAGTT 179107
Score = 143 bits (158), Expect = 2e-29
Identities = 386/583 (66%), Gaps = 13/583 (2%)
Strand=Plus/Plus
Query 22143 TGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCG 22202
|||| || ||||| |||||||| ||||| ||||| |||||| | ||| || || |
Sbjct 177274 TGGTACGGAGATAGTACATGCCAGTCTTGAGACCAGCCTTCCAGCCAGCAAAGTGCATAG 177333
Query 22203 ACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGA 22262
| || | || || | | ||| | ||||| | || | ||||||| ||| || |
Sbjct 177334 AAGTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTCAGCGACTGAGACTGGTCAA 177393
Query 22263 TAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGG 22322
|||| || || || || |||||||| | || | | | ||| ||| || ||||| ||||
Sbjct 177394 TAAAAGCACCACGGTCAGCGGCCATCTCAATGATTCTTCGCTGCGAGATCTCCCAGACGG 177453
Query 22323 TCTTGTACAGTTGCCTGATCTCTAACGGTATCGATTCG-ATCCTCTGGACGGACCCGTTA 22381
||||||| ||| | | |||| || || | | | ||||| | || || |
Sbjct 177454 TCTTGTAAAGTGTCTTTGTCTCCTCAGGGAT-GTTGGGAATCCTGGCAATCGAACCTCCA 177512
Query 22382 TTGTGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTG 22441
| | ||||| || || || | || ||||| ||| ||| || | || |||
Sbjct 177513 TCGGCGATGATACGGTTCTTCATGTTCTCAGACCACAGACCCATGTCGACAAGGTCCTTG 177572
Query 22442 ACCA--GATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGT 22499
| || ||| |||| || || || ||||| || | | ||| ||||| || ||||
Sbjct 177573 AGCAACCATG--GGTTGACAACCTGGAACTCACCAGCGAGGACACGGCGGGAATAGATGT 177630
Query 22500 TGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCG 22559
|||| ||| | || ||||| | || ||||| ||||| ||||| | || || || || |
Sbjct 177631 TGGAGGTGTATGGCTCGAAGCACTCGTTGTTGCCCAGAATCTGTGAAGTGGAGGCAGTTG 177690
Query 22560 GCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCA 22619
|||| || || | || |||||||| | || ||||||| | ||| || ||| ||
Sbjct 177691 GCATGGGTGCAATGAGCAGCGAGTTGCGCACACCGTGCTCAGCAATCTTCTCCTTCAGAG 177750
Query 22620 TCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCA--ACAC 22677
|| ||||||||| || || | ||||| ||||| |||||||||||| || | | ||
Sbjct 177751 ACGCCCAGTCCCAGAGGTCAGTAGGCGTGACATT---CCACATATCGTACTGGAGGATAC 177807
Query 22678 GCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCA 22720
| | || || || |||||||| || | ||| ||||||
Sbjct 177808 CCTGGGATACG--GGAGATCCTTCGTAGGTCTTGTAAGGACCA 177848
>seq4
Length=2069545
Score = 167 bits (184), Expect = 2e-36
Identities = 474/724 (65%), Gaps = 11/724 (2%)
Strand=Plus/Minus
Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632
||| | |||||||| ||||| || || || || ||||||| || || | ||||| ||
Sbjct 1053816 TGGCAGATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCAGAGGAGATCGACCTCTCC 1053757
Query 57633 AAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689
||||| || ||| ||| | | |||| || ||| | || || |||
Sbjct 1053756 AAGGACCTTCACGACTGGAACAAGCGTCTCAACGATGACGAGCGCTTCTTCATCTCCCAC 1053697
Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749
|| | || || ||||| || |||||||| ||||| |||||||| | || || ||||
Sbjct 1053696 GTCCTCGCCTTCTTCGCAGCCTCCGATGGCATTGTCAACGAGAACCTTGTTGAGCGATTC 1053637
Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809
|| ||||| ||| | | ||||| ||||||| ||||| || ||| | || ||
Sbjct 1053636 TCTAGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAAATCATGATGGAG 1053577
Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAG 57869
||||| || ||||| | || || || |||||||| || ||| | | || | | ||
Sbjct 1053576 AACGTTCACTCAGAGACCTACTCTCTGCTCATCGACACATACATTAGCGAGCCCAAGCAG 1053517
Query 57870 AA-ACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTG 57928
| ||| || |||||||| ||||| | || ||| ||| ||||||||| || ||
Sbjct 1053516 CGCAGGTAC-CTCTTCAACGCCATCGACAACATCCCCTGCATCCGCAAGAAGGCCGACTG 1053458
Query 57929 GTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGCGTT 57985
| | | |||||| || || | |||| |||||| | | || | || ||
Sbjct 1053457 GGCCCTGCGATGGATCTC---CGACAAGAACTCCACATTCGCCAACCGCCTCGTTGCATT 1053401
Query 57986 CGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAA 58045
|||||| || || ||||| ||||| || || || | || || ||| | |||||
Sbjct 1053400 CGCCGCTGTTGAGGGTATCTTCTTCAGCGGTTCTTTCGCCTCCATCTTCTGGCTCAAGAA 1053341
Query 58046 ACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCT 58105
||||| ||||||||||| || || || ||||||| | || || || |||||||| |
Sbjct 1053340 GCGCGGTCTGATGCCCGGTCTAACATTCTCCAACGAGCTCATCTCCCGTGACGAGGGCAT 1053281
Query 58106 CCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCG 58165
|| || || || || ||||| | | ||||| | | | || || || | | ||
Sbjct 1053280 GCACACCGACTTCGCCTGCCTTCTCTTCTCTCTCCTCGAGAACAAGCCCAGCCCAGAGTC 1053221
Query 58166 CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCT 58225
|| | || ||||| || || |||| ||| || | ||||| | | ||| || ||
Sbjct 1053220 TGTCAGAGCTATCATCACTGAAGCCGTCGAGATTGAGCAGGAGTTCTTGAGCGACGCACT 1053161
Query 58226 ACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGC 58285
||| || ||||||| |||||| | | | |||| | ||||| ||||| || ||
Sbjct 1053160 ACCATGCGCTCTGCTCGGCATGAACGCTACTCTCATGTGCCAATACATCGAGTTCGTCGC 1053101
Query 58286 CGAC 58289
|||
Sbjct 1053100 TGAC 1053097
>seq1
Length=2771824
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||| ||||| ||||| ||||| ||||| || ||||| |||| || ||| | |
Sbjct 1871741 ATGCAAATCTTCGTCAAGACCCTGACTGGCAAGACCATCACGCTCGAGGTGGAATCAAGC 1871682
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | | || | ||||| || || |||||||| || | || || |||||
Sbjct 1871681 GACACTATTGACAACGTCAAGTCGAAGATCCAAGACAAGGAGGGTATTCCTCCGGACCAA 1871622
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| || || |||||||||||| ||| | ||| || |||
Sbjct 1871621 CAGCGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGTACTCTCTCCGACTACAAC 1871562
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
|| ||||| || || || || || || || || | ||| | || ||||
Sbjct 1871561 ATCCAAAAGGAGTCCACACTGCACCTTGTCCTCCGCCTGCGCGGTGGTA 1871513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765530755520
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